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The efficient delivery of cellular constituents to their proper location is of fundamental importance for all cells and is of particular interest to neuroscientists, because of the unique functions and complex architecture of neurons. Protein Trafficking in Neurons examines mechanisms of protein trafficking and the role of trafficking in neuronal functioning from development to plasticity to disease. The book is divided into seven sections that review mechanisms of protein transport, the role of protein trafficking in synapse formation, exo- and endocytosis, transport of receptors, tra

Neurons. --- Neurons - metabolism. --- Physiological transport. --- Protein Transport. --- Proteins. --- Proteins - Physiological transport. --- Proteins--Physiological transport, Neurons. Protein Transport. Neurons--metabolism. . --- Proteins --- Neurons --- Protein Transport --- Metabolism --- Cells --- Metabolic Phenomena --- Nervous System --- Biological Transport --- Phenomena and Processes --- Anatomy --- Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- Physiological transport --- Anatomies --- Biologic Transport --- Transport, Biological --- Transport, Biologic --- Nervous Systems --- System, Nervous --- Systems, Nervous --- Metabolic Phenomenon --- Metabolic Process --- Metabolism Concepts --- Metabolism Phenomena --- Process, Metabolic --- Processes, Metabolic --- Anabolism --- Catabolism --- Metabolic Concepts --- Metabolic Processes --- Concept, Metabolic --- Concept, Metabolism --- Concepts, Metabolic --- Concepts, Metabolism --- Metabolic Concept --- Metabolism Concept --- Phenomena, Metabolic --- Phenomena, Metabolism --- Phenomenon, Metabolic --- Cell --- Protein Localization Processes, Cellular --- Protein Sorting --- Protein Targeting --- Protein Trafficking --- Gated Protein Transport --- Protein Translocation --- Transmembrane Protein Transport --- Vesicular Protein Transport --- Protein Sortings --- Protein Traffickings --- Protein Transport, Gated --- Protein Transport, Transmembrane --- Protein Transport, Vesicular --- Protein Transports --- Targeting, Protein --- Trafficking, Protein --- Traffickings, Protein --- Transmembrane Protein Transports --- Nerve Cells --- Cell, Nerve --- Cells, Nerve --- Nerve Cell --- Neuron --- Nerve cells --- Neurocytes --- Nervous system

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Protein import into the endoplasmic reticulum (ER) is the first step in the biogenesis of approximately 10,000 different soluble and membrane proteins of human cells, which amounts to about 30% of the proteome. Most of these proteins fulfill their functions either in the membrane or lumen of the ER plus the nuclear envelope, in one of the organelles of the pathways for endo- and exocytosis (ERGIC, Golgi apparatus, endosome, lysosome, and trafficking vesicles), or at the cell surface as plasma membrane or secreted proteins. An increasing number of membrane proteins destined to lipid droplets, peroxisomes or mitochondria are first targeted to and inserted into the ER membrane prior to their integration into budding lipid droplets or peroxisomes or prior to their delivery to mitochondria via the ER-SURF pathway. ER protein import involves two stages, ER targeting, which guarantees membrane specificity, and the insertion of nascent membrane proteins into or translocation of soluble precursor polypeptides across the ER membrane. In most cases, both processes depend on amino-terminal signal peptides or transmembrane helices, which serve as signal peptide equivalents. However, the targeting reaction can also involve the ER targeting of specific mRNAs or ribosome–nascent chain complexes. Both processes may occur co- or post-translationally and are facilitated by various sophisticated machineries, which reside in the cytosol and the ER membrane, respectively. Except for resident ER and mitochondrial membrane proteins, the mature proteins are delivered to their functional locations by vesicular transport.

Research & information: general --- Biology, life sciences --- chaperones --- contact sites --- endoplasmic reticulum --- ER-SURF --- membrane extraction --- mitochondria --- protein targeting --- bimolecular luminescence complementation --- competition --- split luciferase --- membrane proteins --- protein-protein interactions --- Sec61 complex --- Sec63 --- synthetic peptide complementation --- TRAP complex --- ER protein translocase --- signal peptide --- protein translocation --- nascent peptide chain --- membrane insertion --- molecular modelling --- molecular dynamics simulations --- molecular docking --- signal peptidase --- ER translocon --- signal recognition particle dependent protein targeting --- Sec61 dependent translocation --- co-translational translocation --- inhibitor --- high throughput screening --- Sec61 --- Sec62 --- folding --- insertion --- membrane protein --- translocon --- ribosome --- transmembrane segment --- lipid droplets --- peroxisomes --- PEX3 --- membrane protein insertion --- label-free quantitative mass spectrometry --- differential protein abundance analysis --- Zellweger syndrome --- GET --- protein transport --- SND --- SRP --- EMC --- positive-inside rule --- hydrophobicity --- transmembrane helix --- signal recognition particle --- nascent polypeptide-associated complex --- fidelity --- cyclotriazadisulfonamide --- ER quality control --- DNAJC3 --- preprotein --- Sec61 translocon --- ribosome stalling --- signal sequence --- Sec61 translocase --- NAC --- chaperones --- contact sites --- endoplasmic reticulum --- ER-SURF --- membrane extraction --- mitochondria --- protein targeting --- bimolecular luminescence complementation --- competition --- split luciferase --- membrane proteins --- protein-protein interactions --- Sec61 complex --- Sec63 --- synthetic peptide complementation --- TRAP complex --- ER protein translocase --- signal peptide --- protein translocation --- nascent peptide chain --- membrane insertion --- molecular modelling --- molecular dynamics simulations --- molecular docking --- signal peptidase --- ER translocon --- signal recognition particle dependent protein targeting --- Sec61 dependent translocation --- co-translational translocation --- inhibitor --- high throughput screening --- Sec61 --- Sec62 --- folding --- insertion --- membrane protein --- translocon --- ribosome --- transmembrane segment --- lipid droplets --- peroxisomes --- PEX3 --- membrane protein insertion --- label-free quantitative mass spectrometry --- differential protein abundance analysis --- Zellweger syndrome --- GET --- protein transport --- SND --- SRP --- EMC --- positive-inside rule --- hydrophobicity --- transmembrane helix --- signal recognition particle --- nascent polypeptide-associated complex --- fidelity --- cyclotriazadisulfonamide --- ER quality control --- DNAJC3 --- preprotein --- Sec61 translocon --- ribosome stalling --- signal sequence --- Sec61 translocase --- NAC

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Mitochondrial transporters are membrane-inserted proteins which provide a link between metabolic reactions occurring within the mitochondrial matrix and outside the organelles by catalyzing the translocation of numerous solutes across the mitochondrial membrane. They include the mitochondrial carrier family members, the proteins involved in pyruvate transport, ABC transporters and channels, and are, therefore, essential for many biological processes and cell homeostasis. Identification and functional studies of many mitochondrial transporters have been performed over the years using both in vitro and in vivo systems. The few recently solved structures of these transporters have paved the way for further investigations. Furthermore, alterations in their function are responsible for several diseases.

Research & information: general --- Biology, life sciences --- hypoxia --- resistance to hypoxia --- mitochondria --- mitochondrial calcium transport --- mitochondrial calcium uniporter complex --- mitochondrial Ca2+-induced permeability transition pore --- cyclophilin D --- ATP synthase --- disease --- error of metabolism --- mitochondrial carrier --- mitochondrial carrier disease --- mitochondrial disease --- mitochondrial transporter --- membrane transport --- mutation --- SLC25. --- mitochondrial permeability transition --- apoptosis --- necrosis --- ischemia/reperfusion --- cancer --- neurodegeneration --- cyclosporin A --- metabolite transport --- mitochondrial pyruvate carrier --- sideroflexin --- TOM --- TIM chaperones --- TIM22 --- protein translocation --- mitochondrial biogenesis --- amino acid --- biological function --- ion --- inner mitochondrial membrane --- mitochondrial carrier family --- organic acid --- substrate specificity --- transport mechanism --- vitamin --- USMG5/DAPIT --- glucose-stimulated insulin secretion --- glucose-induced expression --- membrane subunits of ATP synthase --- ATP synthase oligomers mitochondrial cristae morphology --- metabolism --- metabolic disorders --- adult-onset type II citrullinemia (CTLN2) --- aspartate/glutamate carrier (AGC) --- animal model --- argininosuccinate synthetase (ASS) --- aversion to carbohydrates --- citrin --- food taste --- neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) --- protein–protein interaction --- MPC --- lifespan --- pyruvate metabolism --- mitochondrial transport --- peroxisomes --- carrier --- cofactor --- ABC transporter --- aquaporin --- ion channels --- potassium channels --- ATP --- calcium --- ROS --- potassium channel openers --- MCF --- function --- plant metabolism --- plant development --- diseases --- VDAC1 --- virus --- pancreatic islets --- β-cell --- diabetes --- glucotoxicity --- glucolipotoxicity --- lipotoxicity --- mitochondrial carriers --- SLC transporters --- SLC25 --- SLC54 --- SLC55 --- LETM --- SLC56 --- sequence analysis --- protein targeting --- Voltage-Dependent Anion selective Channel --- isoforms --- oxidative post-translational modification --- gene promoter --- yeast --- bioenergetics --- SLC25A1 --- CIC --- CTP --- citrate --- inflammation --- 22.q11.2 --- NAFLD/NASH --- carnitine --- carnitine acyl-carnitine carrier --- carnitine acyl-carnitine translocase --- post-translational modification --- solute carrier family 25 --- SLC25A20 --- MCU --- mitochondrial Ca2+ uniporter --- Ca2+ signaling --- mitochondrial metabolism --- skeletal muscle mitochondria --- SLC25A51 --- NAD+ transporters --- NAD --- electrophysiology --- ATP-dependent potassium channel

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Mitochondrial transporters are membrane-inserted proteins which provide a link between metabolic reactions occurring within the mitochondrial matrix and outside the organelles by catalyzing the translocation of numerous solutes across the mitochondrial membrane. They include the mitochondrial carrier family members, the proteins involved in pyruvate transport, ABC transporters and channels, and are, therefore, essential for many biological processes and cell homeostasis. Identification and functional studies of many mitochondrial transporters have been performed over the years using both in vitro and in vivo systems. The few recently solved structures of these transporters have paved the way for further investigations. Furthermore, alterations in their function are responsible for several diseases.

Research & information: general --- Biology, life sciences --- hypoxia --- resistance to hypoxia --- mitochondria --- mitochondrial calcium transport --- mitochondrial calcium uniporter complex --- mitochondrial Ca2+-induced permeability transition pore --- cyclophilin D --- ATP synthase --- disease --- error of metabolism --- mitochondrial carrier --- mitochondrial carrier disease --- mitochondrial disease --- mitochondrial transporter --- membrane transport --- mutation --- SLC25. --- mitochondrial permeability transition --- apoptosis --- necrosis --- ischemia/reperfusion --- cancer --- neurodegeneration --- cyclosporin A --- metabolite transport --- mitochondrial pyruvate carrier --- sideroflexin --- TOM --- TIM chaperones --- TIM22 --- protein translocation --- mitochondrial biogenesis --- amino acid --- biological function --- ion --- inner mitochondrial membrane --- mitochondrial carrier family --- organic acid --- substrate specificity --- transport mechanism --- vitamin --- USMG5/DAPIT --- glucose-stimulated insulin secretion --- glucose-induced expression --- membrane subunits of ATP synthase --- ATP synthase oligomers mitochondrial cristae morphology --- metabolism --- metabolic disorders --- adult-onset type II citrullinemia (CTLN2) --- aspartate/glutamate carrier (AGC) --- animal model --- argininosuccinate synthetase (ASS) --- aversion to carbohydrates --- citrin --- food taste --- neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) --- protein–protein interaction --- MPC --- lifespan --- pyruvate metabolism --- mitochondrial transport --- peroxisomes --- carrier --- cofactor --- ABC transporter --- aquaporin --- ion channels --- potassium channels --- ATP --- calcium --- ROS --- potassium channel openers --- MCF --- function --- plant metabolism --- plant development --- diseases --- VDAC1 --- virus --- pancreatic islets --- β-cell --- diabetes --- glucotoxicity --- glucolipotoxicity --- lipotoxicity --- mitochondrial carriers --- SLC transporters --- SLC25 --- SLC54 --- SLC55 --- LETM --- SLC56 --- sequence analysis --- protein targeting --- Voltage-Dependent Anion selective Channel --- isoforms --- oxidative post-translational modification --- gene promoter --- yeast --- bioenergetics --- SLC25A1 --- CIC --- CTP --- citrate --- inflammation --- 22.q11.2 --- NAFLD/NASH --- carnitine --- carnitine acyl-carnitine carrier --- carnitine acyl-carnitine translocase --- post-translational modification --- solute carrier family 25 --- SLC25A20 --- MCU --- mitochondrial Ca2+ uniporter --- Ca2+ signaling --- mitochondrial metabolism --- skeletal muscle mitochondria --- SLC25A51 --- NAD+ transporters --- NAD --- electrophysiology --- ATP-dependent potassium channel --- hypoxia --- resistance to hypoxia --- mitochondria --- mitochondrial calcium transport --- mitochondrial calcium uniporter complex --- mitochondrial Ca2+-induced permeability transition pore --- cyclophilin D --- ATP synthase --- disease --- error of metabolism --- mitochondrial carrier --- mitochondrial carrier disease --- mitochondrial disease --- mitochondrial transporter --- membrane transport --- mutation --- SLC25. --- mitochondrial permeability transition --- apoptosis --- necrosis --- ischemia/reperfusion --- cancer --- neurodegeneration --- cyclosporin A --- metabolite transport --- mitochondrial pyruvate carrier --- sideroflexin --- TOM --- TIM chaperones --- TIM22 --- protein translocation --- mitochondrial biogenesis --- amino acid --- biological function --- ion --- inner mitochondrial membrane --- mitochondrial carrier family --- organic acid --- substrate specificity --- transport mechanism --- vitamin --- USMG5/DAPIT --- glucose-stimulated insulin secretion --- glucose-induced expression --- membrane subunits of ATP synthase --- ATP synthase oligomers mitochondrial cristae morphology --- metabolism --- metabolic disorders --- adult-onset type II citrullinemia (CTLN2) --- aspartate/glutamate carrier (AGC) --- animal model --- argininosuccinate synthetase (ASS) --- aversion to carbohydrates --- citrin --- food taste --- neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) --- protein–protein interaction --- MPC --- lifespan --- pyruvate metabolism --- mitochondrial transport --- peroxisomes --- carrier --- cofactor --- ABC transporter --- aquaporin --- ion channels --- potassium channels --- ATP --- calcium --- ROS --- potassium channel openers --- MCF --- function --- plant metabolism --- plant development --- diseases --- VDAC1 --- virus --- pancreatic islets --- β-cell --- diabetes --- glucotoxicity --- glucolipotoxicity --- lipotoxicity --- mitochondrial carriers --- SLC transporters --- SLC25 --- SLC54 --- SLC55 --- LETM --- SLC56 --- sequence analysis --- protein targeting --- Voltage-Dependent Anion selective Channel --- isoforms --- oxidative post-translational modification --- gene promoter --- yeast --- bioenergetics --- SLC25A1 --- CIC --- CTP --- citrate --- inflammation --- 22.q11.2 --- NAFLD/NASH --- carnitine --- carnitine acyl-carnitine carrier --- carnitine acyl-carnitine translocase --- post-translational modification --- solute carrier family 25 --- SLC25A20 --- MCU --- mitochondrial Ca2+ uniporter --- Ca2+ signaling --- mitochondrial metabolism --- skeletal muscle mitochondria --- SLC25A51 --- NAD+ transporters --- NAD --- electrophysiology --- ATP-dependent potassium channel

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Comprehensively covers protein subcellular localization from single-label prediction to multi-label prediction, and includes prediction strategies for virus, plant, and eukaryote species. Three machine learning tools are introduced to improve classification refinement, feature extraction, and dimensionality reduction.

Artificial intelligence. --- Probability. --- Protein transport. --- Statistics as Topic --- Computing Methodologies --- Biological Transport --- Mathematical Concepts --- Phenomena and Processes --- Health Care Evaluation Mechanisms --- Information Science --- Epidemiologic Methods --- Metabolism --- Public Health --- Investigative Techniques --- Metabolic Phenomena --- Quality of Health Care --- Health Care Quality, Access, and Evaluation --- Analytical, Diagnostic and Therapeutic Techniques and Equipment --- Environment and Public Health --- Health Care --- Probability --- Protein Transport --- Artificial Intelligence --- Human Anatomy & Physiology --- Health & Biological Sciences --- Animal Biochemistry --- Computational Intelligence --- AI (Artificial Intelligence) --- Computer Reasoning --- Computer Vision Systems --- Knowledge Acquisition (Computer) --- Knowledge Representation (Computer) --- Machine Intelligence --- Acquisition, Knowledge (Computer) --- Computer Vision System --- Intelligence, Artificial --- Intelligence, Computational --- Intelligence, Machine --- Knowledge Representations (Computer) --- Reasoning, Computer --- Representation, Knowledge (Computer) --- System, Computer Vision --- Systems, Computer Vision --- Vision System, Computer --- Vision Systems, Computer --- Heuristics --- Protein Localization Processes, Cellular --- Protein Sorting --- Protein Trafficking --- Cellular Protein Targeting --- Gated Protein Transport --- Protein Targeting, Cellular --- Protein Translocation --- Transmembrane Protein Transport --- Vesicular Protein Transport --- Protein Transport, Gated --- Protein Transport, Transmembrane --- Protein Transport, Vesicular --- Traffickings, Protein --- Protein Sorting Signals --- Vesicular Transport Proteins --- Probabilities --- Community-Based Distribution --- Contraceptive Distribution --- Delivery of Healthcare --- Dental Care Delivery --- Distribution, Non-Clinical --- Distribution, Nonclinical --- Distributional Activities --- Healthcare --- Healthcare Delivery --- Healthcare Systems --- Non-Clinical Distribution --- Nonclinical Distribution --- Delivery of Dental Care --- Health Care Delivery --- Health Care Systems --- Activities, Distributional --- Activity, Distributional --- Care, Health --- Community Based Distribution --- Community-Based Distributions --- Contraceptive Distributions --- Deliveries, Healthcare --- Delivery, Dental Care --- Delivery, Health Care --- Delivery, Healthcare --- Distribution, Community-Based --- Distribution, Contraceptive --- Distribution, Non Clinical --- Distributional Activity --- Distributions, Community-Based --- Distributions, Contraceptive --- Distributions, Non-Clinical --- Distributions, Nonclinical --- Health Care System --- Healthcare Deliveries --- Healthcare System --- Non Clinical Distribution --- Non-Clinical Distributions --- Nonclinical Distributions --- System, Health Care --- System, Healthcare --- Systems, Health Care --- Systems, Healthcare --- Healthcare Quality, Access, and Evaluation --- Pharmacy Audit --- Quality of Care --- Quality of Healthcare --- Audit, Pharmacy --- Care Quality --- Health Care Quality --- Healthcare Quality --- Pharmacy Audits --- Metabolic Phenomenon --- Metabolic Process --- Metabolism Concepts --- Metabolism Phenomena --- Process, Metabolic --- Processes, Metabolic --- Anabolism --- Catabolism --- Metabolic Concepts --- Metabolic Processes --- Concept, Metabolic --- Concept, Metabolism --- Concepts, Metabolic --- Concepts, Metabolism --- Metabolic Concept --- Metabolism Concept --- Phenomena, Metabolic --- Phenomena, Metabolism --- Phenomenon, Metabolic --- Investigative Technics --- Investigative Technic --- Investigative Technique --- Technic, Investigative --- Technics, Investigative --- Technique, Investigative --- Techniques, Investigative --- Community Health --- Environment, Preventive Medicine & Public Health --- Environment, Preventive Medicine and Public Health --- Health, Community --- Health, Public --- Preventive Medicine --- Education, Public Health Professional --- Epidemiologic Method --- Epidemiological Methods --- Methods, Epidemiologic --- Epidemiological Method --- Method, Epidemiologic --- Method, Epidemiological --- Methods, Epidemiological --- Epidemiology --- Information Sciences --- Science, Information --- Sciences, Information --- Healthcare Evaluation Mechanisms --- Evaluation Mechanism, Healthcare --- Evaluation Mechanisms, Healthcare --- Healthcare Evaluation Mechanism --- Mechanism, Healthcare Evaluation --- Mechanisms, Healthcare Evaluation --- Concept, Mathematical --- Concepts, Mathematical --- Mathematical Concept --- Biologic Transport --- Transport, Biological --- Transport, Biologic --- Transport Vesicles --- Membrane Transport Proteins --- High Performance Computing --- Methodologies, Computing --- Computing Methodology --- Computing, High Performance --- Methodology, Computing --- Performance Computing, High --- Area Analysis --- Estimation Technics --- Estimation Techniques --- Indirect Estimation Technics --- Indirect Estimation Techniques --- Multiple Classification Analysis --- Service Statistics --- Statistical Study --- Statistics, Service --- Tables and Charts as Topic --- Analyses, Area --- Analyses, Multiple Classification --- Area Analyses --- Classification Analyses, Multiple --- Classification Analysis, Multiple --- Estimation Technic, Indirect --- Estimation Technics, Indirect --- Estimation Technique --- Estimation Technique, Indirect --- Estimation Techniques, Indirect --- Indirect Estimation Technic --- Indirect Estimation Technique --- Multiple Classification Analyses --- Statistical Studies --- Studies, Statistical --- Study, Statistical --- Technic, Indirect Estimation --- Technics, Estimation --- Technics, Indirect Estimation --- Technique, Estimation --- Technique, Indirect Estimation --- Techniques, Estimation --- Techniques, Indirect Estimation --- methods --- Proteins --- Machine learning. --- Physiological transport --- Data processing. --- Learning, Machine --- Artificial intelligence --- Machine theory --- Proteids --- Biomolecules --- Polypeptides --- Proteomics --- Bioinformatics. --- Computer Science. --- Proteomics.