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Book
Protein Crystallization under the Presence of an Electric Field
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ISBN: 3038975206 3038975192 Year: 2019 Publisher: MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

This book entitled “Protein Crystallization under the Presence of an Electric Field” covers recent trends and original contributions on the use of electric fields (internal and external) for applications for nucleation control and the effect on the kinetics of crystallization processes. This book also includes basic strategies for growing crystals of biological macromolecules for characterization via X-ray and neutron diffraction as well as using modern X-ray-free electron-lasers. There are six main topics covered on this book, including recent insights into the crystallization process from nucleation and growth peculiarities, when using different kinds of electric fields; the effect of external electric fields on the kinetics of the dislocation-free growth of model proteins; the use of very strong external electric fields for the crystallization of a model protein glucose isomerase; and the use of alternant electric fields using different kinds of pulses and their combination with strong magnetic fields. There are also contributions related to applications in developing electron-transfer devices as well as graphene-based platforms for electrocrystallization and in situ X-ray diffraction characterization.


Book
Data Analytics for Protein Crystallization
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ISBN: 3319589377 3319589369 Year: 2017 Publisher: Cham : Springer International Publishing : Imprint: Springer,

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This unique text/reference presents an overview of the computational aspects of protein crystallization, describing how to build robotic high-throughput and crystallization analysis systems. The coverage encompasses the complete data analysis cycle, including the set-up of screens by analyzing prior crystallization trials, the classification of crystallization trial images by effective feature extraction, the analysis of crystal growth in time series images, the segmentation of crystal regions in images, the application of focal stacking methods for crystallization images, and the visualization of trials. Topics and features: Describes the fundamentals of protein crystallization, and the scoring and categorization of crystallization image trials Introduces a selection of computational methods for protein crystallization screening, and the hardware and software architecture for a basic high-throughput system Presents an overview of the image features used in protein crystallization classification, and a spatio-temporal analysis of protein crystal growth Examines focal stacking techniques to avoid blurred crystallization images, and different thresholding methods for binarization or segmentation Discusses visualization methods and software for protein crystallization analysis, and reviews alternative methods to X-ray diffraction for obtaining structural information Provides an overview of the current challenges and potential future trends in protein crystallization This interdisciplinary work serves as an essential reference on the computational and data analytics components of protein crystallization for the structural biology community, in addition to computer scientists wishing to enter the field of protein crystallization. Dr. Marc L. Pusey is a Research Scientist at iXpressGenes, Inc. Huntsville, AL, USA. Dr. Ramazan Savaş Aygün is an Associate Professor in the Computer Science Department of the University of Alabama in Huntsville, USA.


Book
Biological Crystallization
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ISBN: 3039214047 3039214039 Year: 2019 Publisher: MDPI - Multidisciplinary Digital Publishing Institute

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For at least six hundred million years, life has been a fascinating laboratory of crystallization, referred to as biomineralization. During this huge lapse of time, many organisms from diverse phyla have developed the capability to precipitate various types of minerals, exploring distinctive pathways for building sophisticated structural architectures for different purposes. The Darwinian exploration was performed by trial and error, but the success in terms of complexity and efficiency is evident. Understanding the strategies that those organisms employ for regulating the nucleation, growth, and assembly of nanocrystals to build these sophisticated devices is an intellectual challenge and a source of inspiration in fields as diverse as materials science, nanotechnology, and biomedicine. However, “Biological Crystallization” is a broader topic that includes biomineralization, but also the laboratory crystallization of biological compounds such as macromolecules, carbohydrates, or lipids, and the synthesis and fabrication of biomimetic materials by different routes. This Special Issue collects 15 contributions ranging from biological and biomimetic crystallization of calcium carbonate, calcium phosphate, and silica-carbonate self-assembled materials to the crystallization of biological macromolecules. Special attention has been paid to the fundamental phenomena of crystallization (nucleation and growth), and the applications of the crystals in biomedicine, environment, and materials science.

Keywords

chitosan --- Csep1p --- bond selection during protein crystallization --- bioremediation --- education --- reductants --- heavy metals --- biomimetic crystallization --- MTT assay --- protein crystallization --- drug discovery --- optimization --- polymyxin resistance --- lysozyme --- ependymin-related protein (EPDR) --- equilibration between crystal bond and destructive energies --- barium carbonate --- dyes --- microseed matrix screening --- nanoapatites --- colistin resistance --- Haloalkane dehalogenase --- diffusion --- polyacrylic acid --- random microseeding --- protein ‘affinity’ to water --- insulin --- protein crystal nucleation --- agarose --- lithium ions --- ependymin (EPN) --- {00.1} calcite --- seeding --- Campylobacter consisus --- metallothioneins --- Crohn’s disease --- balance between crystal bond energy and destructive surface energies --- color change --- microbially induced calcite precipitation (MICP) --- crystallization of macromolecules --- crystallization --- calcein --- MCR-1 --- Cry protein crystals --- L-tryptophan --- circular dichroism --- crystal violet --- nanocomposites --- halide-binding site --- calcium carbonate --- PCDA --- ultrasonic irradiation --- adsorption --- biochemical aspects of the protein crystal nucleation --- GTL-16 cells --- proteinase k --- neutron protein crystallography --- classical and two-step crystal nucleation mechanisms --- thermodynamic and energetic approach --- heavy metal contamination --- N-acetyl-D-glucosamine --- crystallization in solution flow --- solubility --- biomorphs --- droplet array --- biomimetic materials --- ferritin --- biomineralization --- wastewater treatment --- H3O+ --- silica --- graphene --- supersaturation dependence of the crystal nucleus size --- pyrrole --- micro-crystals --- nucleation --- crystallography --- mammalian ependymin-related protein (MERP) --- high-throughput --- vaterite transformation --- gradients --- materials science --- bioprecipitation --- biomedicine --- human carbonic anhydrase IX --- protein crystal nucleation in pores --- growth --- crystal growth

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