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Beyond being the most important natural compound source, actinomycetes are the origin of up to two-thirds of all clinically used antibiotics. Currently, new antimicrobials are urgently needed, as infections caused by antibiotic-resistant pathogens are on the rise. In the identification of new antibiotics, many scientists are currently investigating biosynthetic aspects of antibiotic production in actinomycetes. Since the emergence of next-generation sequencing technologies, the field of antibiotics research has experienced a remarkable revival. These bacteria have the potential to produce more antibiotics than previously thought possible. Some antibiotics are produced in standard media, while others require the presence of a specific signaling molecule in the medium. Others, however, are only produced when the native regulation of the biosynthesis gene cluster is overruled. This book covers topics in the field of antibiotic-producing actinomycetes. The following tops are addressed: - Approaches to access novel antibiotic producers for novel natural compounds - Omics and genome mining approaches for the discovery of novel natural compounds - Analyses and genetic engineering of antibiotic biosynthesis - Regulation of the secondary metabolism in actinomycetes
Research & information: general --- Biology, life sciences --- Streptomyces --- biogeography --- comparative genomics --- diversification --- secondary metabolite biosynthetic gene clusters --- SMGC --- natural products --- streptomyces --- rishirilide --- biosynthesis --- polyketides --- polynucleotide phosphorylase --- ribonuclease --- regulation --- promoter --- RNA decay --- polyadenylation --- (p)ppGpp --- antibiotic --- antibiotics --- geomicrobiology --- Illumina sequencing --- microbiome diversity --- Actinobacteria --- Cave microbiology --- secondary metabolite --- rare Actinobacteria --- Amycolatopsis --- unculturability --- siderophore --- glycopeptide antibiotics --- dbv cluster --- regulatory genes --- StrR --- LAL --- LuxR solo --- dalbavancin --- A40926 --- Streptomyces lividans --- secretion pathways --- secretory proteins --- signal peptides --- actinomycetes --- teicoplanin --- van resistance genes --- Streptomyces tsukubaensis --- tacrolimus --- FK506 --- omics --- screening --- secondary metabolism --- differentiation --- elicitors --- morphology --- liquid cultures --- metagenomics --- rare actinomycetes --- dereplication --- metabolomics --- genome mining --- secondary metabolites --- novel compounds --- physicochemical screening --- physical and chemical properties --- structural diversity --- biological activity --- Actinoallomurus --- antibiotics polyethers --- lysolipin --- minimal PKS II --- cyclases --- benz[a]naphthacene quinone --- tridecaketide --- aromatic polyketide --- pentacyclic angular polyphenol --- extended polyketide chain --- actinobacteria --- β-lactamase --- resistance --- β-lactamase inhibitor --- polyketide synthases --- acyltransferases --- engineering --- new bioactive compounds --- symbiosis --- drug discovery --- chemical ecology --- culture-based approaches --- strain --- specialized metabolites --- biosynthetic gene cluster --- n/a
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Beyond being the most important natural compound source, actinomycetes are the origin of up to two-thirds of all clinically used antibiotics. Currently, new antimicrobials are urgently needed, as infections caused by antibiotic-resistant pathogens are on the rise. In the identification of new antibiotics, many scientists are currently investigating biosynthetic aspects of antibiotic production in actinomycetes. Since the emergence of next-generation sequencing technologies, the field of antibiotics research has experienced a remarkable revival. These bacteria have the potential to produce more antibiotics than previously thought possible. Some antibiotics are produced in standard media, while others require the presence of a specific signaling molecule in the medium. Others, however, are only produced when the native regulation of the biosynthesis gene cluster is overruled. This book covers topics in the field of antibiotic-producing actinomycetes. The following tops are addressed: - Approaches to access novel antibiotic producers for novel natural compounds - Omics and genome mining approaches for the discovery of novel natural compounds - Analyses and genetic engineering of antibiotic biosynthesis - Regulation of the secondary metabolism in actinomycetes
Streptomyces --- biogeography --- comparative genomics --- diversification --- secondary metabolite biosynthetic gene clusters --- SMGC --- natural products --- streptomyces --- rishirilide --- biosynthesis --- polyketides --- polynucleotide phosphorylase --- ribonuclease --- regulation --- promoter --- RNA decay --- polyadenylation --- (p)ppGpp --- antibiotic --- antibiotics --- geomicrobiology --- Illumina sequencing --- microbiome diversity --- Actinobacteria --- Cave microbiology --- secondary metabolite --- rare Actinobacteria --- Amycolatopsis --- unculturability --- siderophore --- glycopeptide antibiotics --- dbv cluster --- regulatory genes --- StrR --- LAL --- LuxR solo --- dalbavancin --- A40926 --- Streptomyces lividans --- secretion pathways --- secretory proteins --- signal peptides --- actinomycetes --- teicoplanin --- van resistance genes --- Streptomyces tsukubaensis --- tacrolimus --- FK506 --- omics --- screening --- secondary metabolism --- differentiation --- elicitors --- morphology --- liquid cultures --- metagenomics --- rare actinomycetes --- dereplication --- metabolomics --- genome mining --- secondary metabolites --- novel compounds --- physicochemical screening --- physical and chemical properties --- structural diversity --- biological activity --- Actinoallomurus --- antibiotics polyethers --- lysolipin --- minimal PKS II --- cyclases --- benz[a]naphthacene quinone --- tridecaketide --- aromatic polyketide --- pentacyclic angular polyphenol --- extended polyketide chain --- actinobacteria --- β-lactamase --- resistance --- β-lactamase inhibitor --- polyketide synthases --- acyltransferases --- engineering --- new bioactive compounds --- symbiosis --- drug discovery --- chemical ecology --- culture-based approaches --- strain --- specialized metabolites --- biosynthetic gene cluster --- n/a
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Beyond being the most important natural compound source, actinomycetes are the origin of up to two-thirds of all clinically used antibiotics. Currently, new antimicrobials are urgently needed, as infections caused by antibiotic-resistant pathogens are on the rise. In the identification of new antibiotics, many scientists are currently investigating biosynthetic aspects of antibiotic production in actinomycetes. Since the emergence of next-generation sequencing technologies, the field of antibiotics research has experienced a remarkable revival. These bacteria have the potential to produce more antibiotics than previously thought possible. Some antibiotics are produced in standard media, while others require the presence of a specific signaling molecule in the medium. Others, however, are only produced when the native regulation of the biosynthesis gene cluster is overruled. This book covers topics in the field of antibiotic-producing actinomycetes. The following tops are addressed: - Approaches to access novel antibiotic producers for novel natural compounds - Omics and genome mining approaches for the discovery of novel natural compounds - Analyses and genetic engineering of antibiotic biosynthesis - Regulation of the secondary metabolism in actinomycetes
Research & information: general --- Biology, life sciences --- Streptomyces --- biogeography --- comparative genomics --- diversification --- secondary metabolite biosynthetic gene clusters --- SMGC --- natural products --- streptomyces --- rishirilide --- biosynthesis --- polyketides --- polynucleotide phosphorylase --- ribonuclease --- regulation --- promoter --- RNA decay --- polyadenylation --- (p)ppGpp --- antibiotic --- antibiotics --- geomicrobiology --- Illumina sequencing --- microbiome diversity --- Actinobacteria --- Cave microbiology --- secondary metabolite --- rare Actinobacteria --- Amycolatopsis --- unculturability --- siderophore --- glycopeptide antibiotics --- dbv cluster --- regulatory genes --- StrR --- LAL --- LuxR solo --- dalbavancin --- A40926 --- Streptomyces lividans --- secretion pathways --- secretory proteins --- signal peptides --- actinomycetes --- teicoplanin --- van resistance genes --- Streptomyces tsukubaensis --- tacrolimus --- FK506 --- omics --- screening --- secondary metabolism --- differentiation --- elicitors --- morphology --- liquid cultures --- metagenomics --- rare actinomycetes --- dereplication --- metabolomics --- genome mining --- secondary metabolites --- novel compounds --- physicochemical screening --- physical and chemical properties --- structural diversity --- biological activity --- Actinoallomurus --- antibiotics polyethers --- lysolipin --- minimal PKS II --- cyclases --- benz[a]naphthacene quinone --- tridecaketide --- aromatic polyketide --- pentacyclic angular polyphenol --- extended polyketide chain --- actinobacteria --- β-lactamase --- resistance --- β-lactamase inhibitor --- polyketide synthases --- acyltransferases --- engineering --- new bioactive compounds --- symbiosis --- drug discovery --- chemical ecology --- culture-based approaches --- strain --- specialized metabolites --- biosynthetic gene cluster --- Streptomyces --- biogeography --- comparative genomics --- diversification --- secondary metabolite biosynthetic gene clusters --- SMGC --- natural products --- streptomyces --- rishirilide --- biosynthesis --- polyketides --- polynucleotide phosphorylase --- ribonuclease --- regulation --- promoter --- RNA decay --- polyadenylation --- (p)ppGpp --- antibiotic --- antibiotics --- geomicrobiology --- Illumina sequencing --- microbiome diversity --- Actinobacteria --- Cave microbiology --- secondary metabolite --- rare Actinobacteria --- Amycolatopsis --- unculturability --- siderophore --- glycopeptide antibiotics --- dbv cluster --- regulatory genes --- StrR --- LAL --- LuxR solo --- dalbavancin --- A40926 --- Streptomyces lividans --- secretion pathways --- secretory proteins --- signal peptides --- actinomycetes --- teicoplanin --- van resistance genes --- Streptomyces tsukubaensis --- tacrolimus --- FK506 --- omics --- screening --- secondary metabolism --- differentiation --- elicitors --- morphology --- liquid cultures --- metagenomics --- rare actinomycetes --- dereplication --- metabolomics --- genome mining --- secondary metabolites --- novel compounds --- physicochemical screening --- physical and chemical properties --- structural diversity --- biological activity --- Actinoallomurus --- antibiotics polyethers --- lysolipin --- minimal PKS II --- cyclases --- benz[a]naphthacene quinone --- tridecaketide --- aromatic polyketide --- pentacyclic angular polyphenol --- extended polyketide chain --- actinobacteria --- β-lactamase --- resistance --- β-lactamase inhibitor --- polyketide synthases --- acyltransferases --- engineering --- new bioactive compounds --- symbiosis --- drug discovery --- chemical ecology --- culture-based approaches --- strain --- specialized metabolites --- biosynthetic gene cluster
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Two review papers, eight research articles, and one brief report were published in this Special Issue. They showed the rich resources that are present within the genomes of marine microorganisms and discussed the use of recently developed tools and technologies to exploit this genetic richness. Examples include the rational supply of precursors according to the relevant biosynthetic pathway and stress driven discovery together with the use of histone deacetylase inhibitors to facilitate the discovery of new bioactive molecules with potential biopharmaceutical applications. We believe that the content of this Special Issue reflects the current state-of-the-art research in this area and highlights the interesting strategies that are being employed to uncover increasing numbers of exciting novel compounds for drug discovery from marine genetic resources.
antibacterial activity --- polyketide synthase --- halo-extremophyles --- antibacterial --- gene cluster --- Penicillium chrysogenum --- bacillomycin --- secondary metabolites --- drug discovery --- biosynthesis --- polycyclic tetramate macrolactams --- actinobacteria --- biosynthetic gene clusters --- phylotype --- comparative genomics --- IclR family regulator --- polyketide antibiotics --- antifungal --- fatty acid amide --- Antarctica --- marine microorganisms --- NdgRyo --- nonribosomal peptides --- Marisediminicola --- genome mining --- antimicrobial --- sponge --- Stachybotrys --- carotenoid --- marine --- archaea --- haloenzymes --- natural products --- Streptomyces sp. SCSIO 40010 --- 16S rRNA metagenomics --- ecotype --- medicinal chemistry --- cytotoxicity --- marine natural products (MNPs) --- Streptomyces --- marine Bacillus --- antimicrobial activity --- amino compound --- bacillibactin --- meroterpenoid --- fibrinolytic activity --- metal stress technique --- isoindolinone biosynthesis --- Streptomyces pratensis --- histone-deacetylase inhibitor --- marine natural product --- Odiel marshlands
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In recent years, marine genomics has become a growning rapidly field, helped by the large amount of information that is becoming available to the international scientific community. Taking into account the current excitement in the field of marine biotechnology, this Special Issue entitled “Genome Mining and Synthetic Biology in Marine Natural Product Discovery” aims to to assess the impact of these molecular approaches on the discovery of bioactive compounds from marine organisms. The term “genome mining” is used to identify all bioinformatic investigations aimed at detecting the biosynthetic pathways of bioactive natural products and their possible functional and chemical interactions. Several studies are now reporting on marine organisms. Oceans cover nearly 70% of the Earth’s surface and host a huge ecological, chemical, and biological diversity. The natural conditions of the sea favor, in marine organisms, the production of a large variety of novel molecules with great pharmaceutical potential. Marine organisms are unique in their structural and functional features compared to terrestrial ones. Innovation in this field is very rapid, as revealed by the funding of several Seventh Framework Programme (FP7) and Horizon 2020 projects under the topic “Blue Growth”, with the urgent goal of discovering new drugs.
Technology: general issues --- genome mining --- global regulator --- LaeA --- overexpression --- Penicillium dipodomyis --- sorbicillinoids --- ulvan-derived oligosaccharides --- ulvan lyase --- heterologous expression --- polysaccharide lyase family 25 --- whole-genome sequencing --- docosahexaenoic acid (DHA) --- polyunsaturated fatty acid --- fatty acid synthesis pathway --- polyketide synthase pathway --- bacteria --- fungi --- natural products --- synthetic biology --- microalgae --- monogalactosyldiacylglycerol synthase --- UDP-sulfoquinovose synthase --- sulfoquinovosyltransferase --- monogalactosyldiacylglycerols --- sulfoquinovosyldiacylglycerols --- transcriptome analysis --- genome mining --- global regulator --- LaeA --- overexpression --- Penicillium dipodomyis --- sorbicillinoids --- ulvan-derived oligosaccharides --- ulvan lyase --- heterologous expression --- polysaccharide lyase family 25 --- whole-genome sequencing --- docosahexaenoic acid (DHA) --- polyunsaturated fatty acid --- fatty acid synthesis pathway --- polyketide synthase pathway --- bacteria --- fungi --- natural products --- synthetic biology --- microalgae --- monogalactosyldiacylglycerol synthase --- UDP-sulfoquinovose synthase --- sulfoquinovosyltransferase --- monogalactosyldiacylglycerols --- sulfoquinovosyldiacylglycerols --- transcriptome analysis
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Bacterial infections cause millions of deaths globally, particularly in children and the elderly, and four of the 10 leading causes of death are infectious diseases in low- and middle-income countries. The continuous use of antibiotics has resulted in multi-resistant bacterial strains all over the world, such as Community-associated Methicillin-resistant Staphylococcus aureus (MRSA), extended-spectrum β-lactamases (ESBLs), and, as expected, hospitals have become breeding grounds for human-associated microorganisms, especially in critical care units.
Research & information: general --- Biology, life sciences --- actinomycetes --- antibiotic biosynthesis --- silent biosynthetic pathways --- γ-butyrolactones --- HiTES --- translation inhibitors --- marine actinobacteria --- Streptomyces sp. --- enzyme inhibition --- antimicrobial --- antioxidant --- cytotoxicity --- GC-MS --- pyrrolopyrazines --- myxobacteria --- antivirals --- secondary metabolites --- HIV --- Ebola --- hepatitis viruses --- diversity --- uncultured --- new antibiotics --- Streptomyces --- polyketides --- secondary metabolite --- polyketide synthases (PKSs) --- actinomycetes --- antibiotic biosynthesis --- silent biosynthetic pathways --- γ-butyrolactones --- HiTES --- translation inhibitors --- marine actinobacteria --- Streptomyces sp. --- enzyme inhibition --- antimicrobial --- antioxidant --- cytotoxicity --- GC-MS --- pyrrolopyrazines --- myxobacteria --- antivirals --- secondary metabolites --- HIV --- Ebola --- hepatitis viruses --- diversity --- uncultured --- new antibiotics --- Streptomyces --- polyketides --- secondary metabolite --- polyketide synthases (PKSs)
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In recent years, marine genomics has become a growning rapidly field, helped by the large amount of information that is becoming available to the international scientific community. Taking into account the current excitement in the field of marine biotechnology, this Special Issue entitled “Genome Mining and Synthetic Biology in Marine Natural Product Discovery” aims to to assess the impact of these molecular approaches on the discovery of bioactive compounds from marine organisms. The term “genome mining” is used to identify all bioinformatic investigations aimed at detecting the biosynthetic pathways of bioactive natural products and their possible functional and chemical interactions. Several studies are now reporting on marine organisms. Oceans cover nearly 70% of the Earth’s surface and host a huge ecological, chemical, and biological diversity. The natural conditions of the sea favor, in marine organisms, the production of a large variety of novel molecules with great pharmaceutical potential. Marine organisms are unique in their structural and functional features compared to terrestrial ones. Innovation in this field is very rapid, as revealed by the funding of several Seventh Framework Programme (FP7) and Horizon 2020 projects under the topic “Blue Growth”, with the urgent goal of discovering new drugs.
Technology: general issues --- genome mining --- global regulator --- LaeA --- overexpression --- Penicillium dipodomyis --- sorbicillinoids --- ulvan-derived oligosaccharides --- ulvan lyase --- heterologous expression --- polysaccharide lyase family 25 --- whole-genome sequencing --- docosahexaenoic acid (DHA) --- polyunsaturated fatty acid --- fatty acid synthesis pathway --- polyketide synthase pathway --- bacteria --- fungi --- natural products --- synthetic biology --- microalgae --- monogalactosyldiacylglycerol synthase --- UDP-sulfoquinovose synthase --- sulfoquinovosyltransferase --- monogalactosyldiacylglycerols --- sulfoquinovosyldiacylglycerols --- transcriptome analysis --- n/a
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Bacterial infections cause millions of deaths globally, particularly in children and the elderly, and four of the 10 leading causes of death are infectious diseases in low- and middle-income countries. The continuous use of antibiotics has resulted in multi-resistant bacterial strains all over the world, such as Community-associated Methicillin-resistant Staphylococcus aureus (MRSA), extended-spectrum β-lactamases (ESBLs), and, as expected, hospitals have become breeding grounds for human-associated microorganisms, especially in critical care units.
actinomycetes --- antibiotic biosynthesis --- silent biosynthetic pathways --- γ-butyrolactones --- HiTES --- translation inhibitors --- marine actinobacteria --- Streptomyces sp. --- enzyme inhibition --- antimicrobial --- antioxidant --- cytotoxicity --- GC-MS --- pyrrolopyrazines --- myxobacteria --- antivirals --- secondary metabolites --- HIV --- Ebola --- hepatitis viruses --- diversity --- uncultured --- new antibiotics --- Streptomyces --- polyketides --- secondary metabolite --- polyketide synthases (PKSs)
Choose an application
In recent years, marine genomics has become a growning rapidly field, helped by the large amount of information that is becoming available to the international scientific community. Taking into account the current excitement in the field of marine biotechnology, this Special Issue entitled “Genome Mining and Synthetic Biology in Marine Natural Product Discovery” aims to to assess the impact of these molecular approaches on the discovery of bioactive compounds from marine organisms. The term “genome mining” is used to identify all bioinformatic investigations aimed at detecting the biosynthetic pathways of bioactive natural products and their possible functional and chemical interactions. Several studies are now reporting on marine organisms. Oceans cover nearly 70% of the Earth’s surface and host a huge ecological, chemical, and biological diversity. The natural conditions of the sea favor, in marine organisms, the production of a large variety of novel molecules with great pharmaceutical potential. Marine organisms are unique in their structural and functional features compared to terrestrial ones. Innovation in this field is very rapid, as revealed by the funding of several Seventh Framework Programme (FP7) and Horizon 2020 projects under the topic “Blue Growth”, with the urgent goal of discovering new drugs.
genome mining --- global regulator --- LaeA --- overexpression --- Penicillium dipodomyis --- sorbicillinoids --- ulvan-derived oligosaccharides --- ulvan lyase --- heterologous expression --- polysaccharide lyase family 25 --- whole-genome sequencing --- docosahexaenoic acid (DHA) --- polyunsaturated fatty acid --- fatty acid synthesis pathway --- polyketide synthase pathway --- bacteria --- fungi --- natural products --- synthetic biology --- microalgae --- monogalactosyldiacylglycerol synthase --- UDP-sulfoquinovose synthase --- sulfoquinovosyltransferase --- monogalactosyldiacylglycerols --- sulfoquinovosyldiacylglycerols --- transcriptome analysis --- n/a
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Microbial natural products have been an important traditional source of valuable antibiotics and other drugs but interest in them waned in the 1990s when big pharma decided that their discovery was no longer cost-effective and concentrated instead on synthetic chemistry as a source of novel compounds, often with disappointing results. Moreover understanding the biosynthesis of complex natural products was frustratingly difficult. With the development of molecular genetic methods to isolate and manipulate the complex microbial enzymes that make natural products, unexpected chemistry has been
Biosynthesis. --- Carbohydrates -- Synthesis. --- Microbial biotechnology. --- Peptides -- Synthesis. --- Polyketides -- Synthesis. --- Metabolism --- Carbon-Carbon Ligases --- Multienzyme Complexes --- Complex Mixtures --- Biochemical Processes --- Chemicals and Drugs --- Enzymes and Coenzymes --- Chemical Processes --- Biochemical Phenomena --- Ligases --- Metabolic Phenomena --- Chemical Phenomena --- Phenomena and Processes --- Peptide Biosynthesis --- Polyketide Synthases --- Enzymes --- Biological Products --- Carbohydrates --- Human Anatomy & Physiology --- Health & Biological Sciences --- Animal Biochemistry --- Peptides --- Polyketides --- Synthesis. --- Peptide synthesis --- Acetogenins --- Biological synthesis --- Synthesis, Biological --- Ketenes --- Polymers --- Biochemical engineering --- Biochemistry --- Organic compounds --- Synthetic biology --- Biochemical templates --- Synthesis
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