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Application pharmacogénomique des microarrays : le connectivity map

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Microarrays emerges more and more to be an inevitable tool for molecular biology research. Indeed, the technological progresses of these few years make possible cells whole genome studies in a single experiment. It explains why genes-expression profiling studies are more frequently used in medical research as well as in the clinical reality.
In 2006, some researchers form the Massachusset Institute of Technology described a new microarray application : the Connectivity Map. It consists in a collection of gene-expression profiles that allows to connect biological process, diseases and small molecules.
This innovating microarray application held our mind. It’s why we decided to learn more about the fonctionnality and the uses of this tool. So we used the data from some UCL researchers to improve the Connectivity Map Les microarrays s’imposent de plus en plus comme un outil incontournable pour la recherche en biologie moléculaire. En effet, avec les progrès technologiques de ces dernières années, il est désormais possible d’étudier l’expression de l’ensemble des gènes d’une lignée cellulaire en une seule manipulation. C’est ainsi que les études de profils d’expression génomique prennent une place grandissante dans la recherche médicale ainsi que dans la réalité clinique.
En 2006, des chercheurs du Massachusset Institute of Technology ont décrit une nouvelle application de ces microarrays : le Connectivity Map. Il s’agit d’une banque de données permettant de relier des états biologiques et des molécules pharmacologiques, en se basant sur les profils d’expression génomique.
Cette utilisation innovante des microarrays a retenu toute notre attention. C’est pourquoi nous avons essayé de comprendre le principe de fonctionnement et les intérêts de cet outil. Des expériences effectuées par des chercheurs de l’UCL nous ont servi de base afin de tester ce Connectivity Map


Periodical
"Oligonucleotides (formerly Antisense and Nucleic Acid Drug Development; continued as Nucleic Acid Therapeutics)"
ISSN: 15578526 15454576

Microarray analysis
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ISBN: 0471414433 Year: 2003 Publisher: New York, NY : John Wiley,

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Microarrays & microplates : applications in biomedical sciences
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ISBN: 185996074X 9781859960745 Year: 2003 Publisher: Oxford BIOS Scientific Publishers

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&#13;The 'Advanced Methods' series is intended for advanced undergraduates, &#13;postgraduates and established research scientists. Titles in the series &#13;are designed to cover current important areas of research in life &#13;sciences, and include both theoretical background and detailed &#13;protocols. The aim is to give researchers sufficient theory, supported &#13;by references, to take the given protocols and adapt them to their &#13;particular experimental systems. Microarrays and Microplates title &#13;looks at the new microarray and microplate-based technologies which &#13;facilitate large-scale analysis of DNA sequence variants, mRNA &#13;molecules and proteins. The book provides a review of the various &#13;methodologies being used to identify genetic variants and gene &#13;regulation and guides readers through both the application of these &#13;methodologies and experimental procedures.&#13;&#13;

DNA Microarrays : A Practical Approach
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ISBN: 0199637768 0199637776 9780199637775 9780199637768 Year: 2000 Volume: 205 Publisher: Oxford New York Oxford University Press

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DNA microarrays, or biochips, are small glass chips embedded with ordered rows of DNA and by providing a massive parallel platform for data gathering represent a fundamental technical advance in biomedical research. Such biochips enable the use of advanced fabrication, detection, and data mining technologies that allow data gathering at an unprecedented rate. The first chapter is an introduction to the technology of DNA microarrays, emphasizing the methodological fundamentals of biochips. The next two chapters describe the use of confocal scanning in microarray detection and techniques for the efficient cloning and screening of differentially expressed genes. Chapter 4 describes assay optimization for enzymatic assays and chapter 5 antisense scanning arrays. This is followed by a chapter on the manufacture of molecular arrays using ink-jet printing technology. Chapter 7 describes gene expression analysis from cDNA microarrays and then chapter 8 covers the use of expression data in bioinformatics. Chapter 9 describes the use of active microelectronic arrays for DNA hybridization analysis and the last chapter details the use of microarray technology in pharmacogenomics. This Practical Approach book is a comprehensive overview of the new and expanding field of DNA microarray technology and will be invaluable to any researcher interested in the use of biochips.

Keywords

micro-elektronica --- Molecular biology --- DNA (deoxyribonucleic acid) --- moleculaire biologie --- Puces à ADN --- Polymorphisme --- Polymorphism --- DNA microarrays. --- Escherichia coli --- Saccharomyces cerevisiae --- ADN --- DNA --- ARN --- RNA --- gene expression --- Puces à ADN --- DNA. --- RNA. --- bio-informatica --- klonen --- parallel processing --- oligonucleotides --- microarrays --- enzymen --- DNA microarrays --- Oligonucleotide Array Sequence Analysis --- 575.3 --- 575.3 Molecular genetics --- Molecular genetics --- DNA Arrays --- DNA Chips --- DNA Microchips --- Gene Chips --- Oligodeoxyribonucleotide Array Sequence Analysis --- Oligonucleotide Microarrays --- Sequence Analysis, Oligonucleotide Array --- cDNA Arrays --- DNA Microarrays --- Oligonucleotide Arrays --- cDNA Microarrays --- Array, DNA --- Array, Oligonucleotide --- Array, cDNA --- Arrays, DNA --- Arrays, Oligonucleotide --- Arrays, cDNA --- Chip, DNA --- Chip, Gene --- Chips, DNA --- Chips, Gene --- DNA Array --- DNA Chip --- DNA Microarray --- DNA Microchip --- Gene Chip --- Microarray, DNA --- Microarray, Oligonucleotide --- Microarray, cDNA --- Microarrays, DNA --- Microarrays, Oligonucleotide --- Microarrays, cDNA --- Microchip, DNA --- Microchips, DNA --- Oligonucleotide Array --- Oligonucleotide Microarray --- cDNA Array --- cDNA Microarray --- Oligonucleotide Probes --- Combinatorial Chemistry Techniques --- Gene Expression Profiling --- DNA biochips --- Biochips --- Immobilized nucleic acids --- instrumentation --- Gene Expression Microarray Analysis

Guide to analysis of DNA microarray data
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ISBN: 0471656046 Year: 2004 Publisher: Hoboken, N.J. : Wiley-Liss,

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In situ hybridization : A practical approach
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ISBN: 0199636583 9780199636587 Year: 1998 Volume: 196 Publisher: Oxford [etc.] : Oxford University Press,

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Book
Microarrays, immune responses, and vaccines
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ISBN: 1573314471 Year: 2002 Publisher: New York (N.Y.) : New York academy of sciences,

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A beginner's guide to microarrays
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ISBN: 9781402074721 1402074727 Year: 2003 Publisher: Boston (Mass.): Kluwer Academic Publishers,

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Dissertation
High dimensional data analysis for new insight in ovarian cancer phenotypes.
Authors: ---
ISBN: 9789036741200 Year: 2010 Publisher: Enschede Ipskamp

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