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Phenotypic variation within populations are essential for biological evolution. Indeed, phenotypic variation can serve as the raw products upon which natural selection acts. Accordingly, we might question if the level of morphological variation (i.e.disparity) might vary over the ontogeny of one species. Here, I test the hypothetical variation of body shape disparity level between post-larval and adult stages in coral reef fishes. Landmark-based geometric morphometrics methods were used to quantify body shapevariation during ontogeny for four species from Moorea Island (French Polynesia) : the surgeonfishes Acanthurus triostegus and Ctenochaetus striatus, the damselfish Chromis viridis, and the cardinalfish Pristiapogon exostigma. First, post-larvae and adults significantly differ in their body shape, and these variations were discussed in a ecomorphological context. Except C.viridis, all the species showed a higher level of morphological disparity at adult stage than at larval stage. This could be explained by a hyper-specialization of C.viridis in the adult stage for habitat use while the other species can use more habitats in the adult stage than in the post-larval stage.
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The study of endangered species is crucial to their survival, and this can be done through monitoring that helps targeting conservation needs. Indirect monitoring methods make it possible to study animals that are difficult to observe. Traces of presence, such as footprints, contain a wide range of information about their author that can be used to characterise an individual. On the one hand, the objective of this study is to identify individuals, their sexes and weights based on 3D models of cheetah tracks including the study of these factors over time. On the other hand, the objective is to determine a new measurement technique for cheetah trails. Eight semi-captive Namibian cheetahs were studied. Geometric morphometrics highlighted shape differences through the use of 25 fixed landmarks and 130 surface sliders. The tracks were discriminated by performing a Linear Discriminant Analysis (LDA) with jack-knife prediction using size and conformation information from a Principal Component Analysis (PCA). Regarding footprint position, the best prediction effectively identifies 95.19% of the footprints. Individuals were correctly identified in 82.9% of the prints, sex in 87.9% of the prints and weight in 87.6% of the prints. The analysis of male prints increased the accuracy of weight identification to 100% for the best case studied. The comparison of direct measurements and digital measurements (with a drone and with a camera) of cheetah trails showed that each technique was equivalent and could substitute the other. Differences in male and female gait characteristics from overstep trails were statistically significant. L'étude d'espèces en voie d'extinction est cruciale pour leur survie et cela passe par le monitoring qui permet de cibler les besoins en termes de conservation. Les méthodes de monitoring indirectes permettent d'étudier des animaux difficilement observables. Les traces de présence, comme les empreintes contiennent une large gamme d'informations à propos de leur auteur qui peuvent être exploitées pour caractériser des individus. D'une part, l'objectif de cette étude est d'identifier les individus, leurs sexes et leurs poids basés sur des modèles 3D de traces de guépards en incluant l'étude de ces facteurs dans le temps. D'autre part, l'objectif est de déterminer une nouvelle technique de mesure pour les démarches de guépards. Huit guépards Namibiens semi-captifs ont été étudiés. La morphométrie géométrique a mis en évidence les différences de conformation des traces grâce à l'utilisation de 25 points de repère fixes et de 130 de pseudo points de repères. Les traces ont été discriminées par la réalisation d'une Analyse Linéaire Discriminante (ALD) avec prédiction jack-knife en utilisant des informations de taille et de conformation issues d'une Analyse en Composantes Principales (ACP). Concernant la position de l'empreinte, la meilleure prédiction identifie efficacement 95.19% des empreintes. L'identification des individus est correcte pour 82.9% des empreintes, celle des sexes pour 87.9% des empreintes et celle du poids pour 87.6% des empreintes. L'analyse des empreintes des mâles a permis d'augmenter la précision de l'identification du poids jusqu'à un taux de 100% pour le meilleur cas étudié. La comparaison des mesures directes et mesures digitales (avec un drone et avec une caméra) des démarches de guépards a démontré que chaque technique était équivalente et pouvait suppléer une autre. Les différences entre démarches (à vitesse similaire) de mâles et de femeles, se sont avérées significatives statistiquement.
Acinonyx jubatus --- cheetah --- 3D modelling --- Track --- Trail --- Wildlife monitoring --- footprint --- geometric morphometrics --- photogrammetry --- indirect monitoring --- Sciences du vivant > Zoologie
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At a time when a sixth mass extinction is about to hit our planet, protection and conservation strategies are the best chances of survival of some wildlife populations. But for those strategies to be effective, the use of reliable monitoring techniques is essential to assess the distribution, dynamic and status of the targeted species. Considering the cost of direct observations and that of invasive high-tech tools, such as camera traps and GPS, collars can be, the use of tracks is a low-cost non-invasive alternative to study elusive species such as carnivores. In the present study, we evaluate the possibility of identifying the anteroposterior (front or hind) and mediolateral (right or left) position of spotted hyena tracks from their digital models created from field photography. Several combinations of data recording and feature extraction methods were tested so that we could compare the accuracy of prediction of their identification algorithm and determine which combination is the most reliable. Track sampling, which consisted of photographing encountered tracks, took place in Hluhluwe-iMfolozi Park, in South Africa. 2D and 3D models of 80 tracks (20 from each position) were constructed using ImageJ and Photoscan software respectively. Landmarks were digitized on the models so that different types of measurements could be extracted by conducting either traditional or geometric morphometrics. Using extracted morphological features, Linear Discriminant Analyses (LDA) generated identification algorithms for each combination of methods. In total, the algorithms of 31 different scenarios were compared, each of which involved (i) a type of model (2D or 3D), (ii) a feature extraction method (traditional or geometric morphometrics), (iii) the types of landmarks used to characterize the form of the models (fixed, fixed and curve-sliders, or fixed and curve- and surface-sliders), (iv) a type of object on which statistical analyses were conducted (independent pads or entire track) , and (v) a type of variables taken into account by the algorithms (shape, size, or both). Nine of the thirty-one scenarios were able to provide algorithms with accuracies of prediction > 95%. It appeared that the relative position of the pads within a track (i.e. the information provided by the “entire track” objects) as well as their sizes are two pieces of information that are essential for the position identification of spotted hyena track. However, before being able to establish which type of model and which type of landmarks provide the most accurate algorithm, the manipulator bias of each method should be quantified and used as a second evaluation criteria. The track modelling process should also be made more effective both in term of time and manipulator bias.
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The Phocidae (true seals) is morphologically the most diverse family of the semi-aquatic clade Pinnipedia, extant phocids having a size range from slightly over one meter (genus Pusa) to over six meters (Mirounga leonina, the southern elephant seal). In addition, some phocids have a marked sexual dimorphism. Historically, long bones and primarily the humerus and the femur, have been considered to be diagnostic for phocid identification. As such, humeri and femora have often been used as type specimens for extinct phocid taxa. In total, over twenty extinct taxa of seals are represented by isolated humeri or isolated femora holotypes, whose state of preservation varies largely. Consequently, morphological phylogeny analyses have relied heavily on humeri and femora. However, recent preliminary studies start to question whether the variations in the morphological features of long bones are truly diagnostic; as a result, can isolated long bones be used as type specimens for species identification? Or is interspecific morphological variation obscured by intraspecific variation? Whereas the limited number of previous studies either used few, simple measurements and/or 2D data of small datasets, a large and comprehensive study capturing intraspecific and interspecific morphological variation in three dimensions has been lacking. Thus, this study aims to quantitatively analyse the importance of morphological variations of long bones on phocid’s systematics, using 3D morphometry. To do so, a 3D Procrustes morphometric analysis followed by a Principal Component Analysis (PCA) and a Linear Discriminant Function Analysis (LDFA) has been performed on 94 humeri and 75 femora 3D models sampling respectively from 20 and 16 phocid taxa. In all, this biological sample includes 25 taxa from 22 phocid genera. To capture the 3D morphology of the long bones, 17 fixed landmarks and 25 sliding landmarks (134 semi landmarks) have been selected on the humeri as well as 14 fixed landmarks and 25 sliding landmarks (106 semi landmarks) for the femora. The resulting PCAs’ morphospaces and LDFAs seem to sort rather well at the subfamily (Phocinae and Monachinae) level for both humeri and femora. However, while some species are isolated in the morphospaces, peculiarly for humerus and the monachine subfamily, the LDFAs show poor abilities to sort the species, the best having a 60.7% success rate. Thus, the morphological variation of long bones in phocids suggests that humeri and femora might be diagnostic enough only to differentiate between subfamilies and maybe some genera. As such, isolated long bones perhaps should not be used as type specimens based only on their morphology. However, the fact that some genera can still be separated with PCAs indicates that the existing fossil record of Phocidae with isolated long bones as type specimens cannot be disregarded altogether and special care is needed when reassessing these records on a species-by-species base. Phocidae est la famille la plus diversifiée morphologiquement du clade semi-aquatique Pinnipedia, les phocidés actuels pouvant mesurer d’à peine plus d’un mètre (genus Pusa) à plus de six mètres de long (Mirounga leonina, l’éléphant de mer du sud). De plus, certains phocidés montrent un dimorphisme sexuel très marqué. Historiquement, les os longs, principalement l’humérus et le fémur, sont considérés diagnostiques quant à l’identification des phocidés. Ainsi, l’humérus et le fémur ont souvent été utilisés comme holotypes pour les taxons fossiles. En tout, plus d’une vingtaine de taxons fossiles ont été basés sur des humérus isolés ou des fémurs isolés, dont l’état de conservation est très variable. En conséquence, les analyses de phylogénie morphologiques se sont basés très largement sur ces fémurs et humérus isolés. Cependant, des études préliminaires récentes commencent à questionner si les variations de caractères morphologiques des os longs sont vraiment diagnostiques ; en conséquence, est-ce que les os longs peuvent être utilisés comme holotypes pour l’identification d’espèces? Ou est-ce que les variations morphologiques interspécifiques sont masquées par celles intraspécifiques? Malgré cela, actuellement, seules peu d’études publiées se concentrent sur une évaluation quantitative de la morphologie des os longs intra- et interspécifique. Alors que ces rares études utilisent soit un nombre limité de mesures simples et/ou des données 2Ds sur des petits échantillons, une étude vaste et complète montrant les variations morphologiques intraspécifiques et interspécifiques en trois dimensions fait défaut. Ainsi, cette étude vise à analyser quantitativement l’importance des variations morphologiques des os longs sur le classement systématique des phocidés, en utilisant la morphométrie 3D. Pour ce faire, une analyse morphométrique 3D de Procrustes suivi par une Analyse de Composante Principale (ACP) et une Analyse Linéaire à Fonction Discriminante (ALFD) ont été réalisées sur respectivement 94 et 75 modèles 3Ds d’humérus et de fémurs provenant respectivement de 20 et 16 taxons de phocidés. En tout, cet échantillon biologique comprend 25 taxons provenant de 22 genres de phocidés. Afin de capturer la morphologie 3D de ces os longs, 17 landmarks fixes et 25 landmarks glissants (134 semis-landmarks) ont été marqués sur les humérus ainsi que 14 landmarks fixes et 25 landmarks glissants (106 semis-landmarks) sur les fémurs. Les morphoespaces résultant des ACPs et les ALDFs semblent trier les os longs au niveau des sous-familles (Phocinae et Monachinae) assez efficacement. Cependant, bien que certaines espèces soient isolées dans les morphoespaces, particulièrement la sous-famille des monachines dans celui de l’humérus, les ALDFs n’obtiennent qu’un succès mitigé pour trier par espèces, le meilleur taux de réussite étant de 60,7%. Ainsi, l’étude des variations morphologiques des os longs chez les phocidés suggère que la morphologie des humérus et fémurs des phocidés est seulement diagnostique pour différencier les sous-familles et certains genres. Par conséquent, les os longs isolés ne devraient peut-être pas être utilisés comme holotypes. Par contre, le fait que certains genres ont pu être isolés par les ACPs indique que l’enregistrement fossile actuel de phocidés avec des os longs isolés comme holotypes ne peut pas être complètement ignoré et une attention particulière doit être apportée lors d’une réévaluation espèce par espèce de cet enregistrement.
femur --- humerus --- geometric morphometrics --- taxonomy --- intraspecific --- fémur --- humérus --- morphométriques géométrique --- taxonomie --- intraspécifique --- Physique, chimie, mathématiques & sciences de la terre > Sciences de la terre & géographie physique --- Sciences du vivant > Multidisciplinaire, généralités & autres
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Consumers in the EU and beyond are increasingly concerned about the impact of pesticides on the environment and human health. In the context of EU phytosanitary and environmental policies, the common EU challenge is to reduce dependence on chemicals, improve food quality and increase the potential for developing more bio-based production systems. Therefore, novel control methods and new strategies that reduce the current dependence on insecticides need to be developed, applied and disseminated among stakeholders. As a cornerstone of sustainable agriculture, integrated pest management (IPM) aims to improve farmers' practices to achieve higher profits while improving environmental quality. Implementing the principles of IPM in agricultural production requires new and up-to-date knowledge generated by science and accepted by farmers. In this Special Issue, we focus on recent advances and methods for IPM in field crops. It contains eight original research articles and two review articles dealing with different aspects of IPM in some of the major field crops: Potato, Maize, Soybean, Sugar Beet, Barley, Rice, Eggplant and Quinoa as well as farmer education issues on IPM. The studies published refer to all the basic principles of IPM and give examples of their implementation in different crops and cropping systems. Research on various aspects of the implementation of IPM in crop production is a continuous need. The research presented helps to provide a mosaic picture with examples of how crop-specific, site-specific and knowledge-intensive IPM practices should be considered and translated into workable practices.
Research & information: general --- Biology, life sciences --- Technology, engineering, agriculture --- Spodoptera frugiperda --- farmers’ knowledge --- perception --- pest management practices --- maize yield losses --- damage severity --- fall armyworm --- sugar beet --- degradation --- residues --- neonicotinoids --- imidacloprid --- thiamethoxam --- malt barley --- barley net blotch --- barley leaf scald --- nitrogen rate --- genotype --- crop residues --- biodiversity --- biopesticides --- conventional insecticides --- crop farming --- ecosystem health --- environmental protection --- insect ecology --- natural enemies --- pest control --- sustainable agriculture --- quinoa --- Eurysacca melanocampta --- Macrosiphum euphorbiae --- Liriomyza huidobrensis --- Frankliniella occidentalis --- IPM --- Peru --- antibiosis --- antixenosis --- tolerance --- eggplant cultivars --- green peach aphid --- alien pest --- Italy --- Oryza sativa --- phytosanitary measures --- rice root-knot nematode --- trap crop technique --- upland rice cultivation --- click beetle --- crop damage --- integrated pest management --- risk assessment --- pest monitoring --- biocontrol --- landscape feature --- habitat manipulation --- companion plant --- mutual fund --- soybean --- pre-sowing soil activities --- soil fauna --- ground beetles --- dominance --- frequency --- Diabrotica virgifera virgifera --- Bt toxins --- resistance --- geometric morphometrics --- SNPs --- n/a --- farmers' knowledge
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Consumers in the EU and beyond are increasingly concerned about the impact of pesticides on the environment and human health. In the context of EU phytosanitary and environmental policies, the common EU challenge is to reduce dependence on chemicals, improve food quality and increase the potential for developing more bio-based production systems. Therefore, novel control methods and new strategies that reduce the current dependence on insecticides need to be developed, applied and disseminated among stakeholders. As a cornerstone of sustainable agriculture, integrated pest management (IPM) aims to improve farmers' practices to achieve higher profits while improving environmental quality. Implementing the principles of IPM in agricultural production requires new and up-to-date knowledge generated by science and accepted by farmers. In this Special Issue, we focus on recent advances and methods for IPM in field crops. It contains eight original research articles and two review articles dealing with different aspects of IPM in some of the major field crops: Potato, Maize, Soybean, Sugar Beet, Barley, Rice, Eggplant and Quinoa as well as farmer education issues on IPM. The studies published refer to all the basic principles of IPM and give examples of their implementation in different crops and cropping systems. Research on various aspects of the implementation of IPM in crop production is a continuous need. The research presented helps to provide a mosaic picture with examples of how crop-specific, site-specific and knowledge-intensive IPM practices should be considered and translated into workable practices.
Spodoptera frugiperda --- farmers’ knowledge --- perception --- pest management practices --- maize yield losses --- damage severity --- fall armyworm --- sugar beet --- degradation --- residues --- neonicotinoids --- imidacloprid --- thiamethoxam --- malt barley --- barley net blotch --- barley leaf scald --- nitrogen rate --- genotype --- crop residues --- biodiversity --- biopesticides --- conventional insecticides --- crop farming --- ecosystem health --- environmental protection --- insect ecology --- natural enemies --- pest control --- sustainable agriculture --- quinoa --- Eurysacca melanocampta --- Macrosiphum euphorbiae --- Liriomyza huidobrensis --- Frankliniella occidentalis --- IPM --- Peru --- antibiosis --- antixenosis --- tolerance --- eggplant cultivars --- green peach aphid --- alien pest --- Italy --- Oryza sativa --- phytosanitary measures --- rice root-knot nematode --- trap crop technique --- upland rice cultivation --- click beetle --- crop damage --- integrated pest management --- risk assessment --- pest monitoring --- biocontrol --- landscape feature --- habitat manipulation --- companion plant --- mutual fund --- soybean --- pre-sowing soil activities --- soil fauna --- ground beetles --- dominance --- frequency --- Diabrotica virgifera virgifera --- Bt toxins --- resistance --- geometric morphometrics --- SNPs --- n/a --- farmers' knowledge
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Consumers in the EU and beyond are increasingly concerned about the impact of pesticides on the environment and human health. In the context of EU phytosanitary and environmental policies, the common EU challenge is to reduce dependence on chemicals, improve food quality and increase the potential for developing more bio-based production systems. Therefore, novel control methods and new strategies that reduce the current dependence on insecticides need to be developed, applied and disseminated among stakeholders. As a cornerstone of sustainable agriculture, integrated pest management (IPM) aims to improve farmers' practices to achieve higher profits while improving environmental quality. Implementing the principles of IPM in agricultural production requires new and up-to-date knowledge generated by science and accepted by farmers. In this Special Issue, we focus on recent advances and methods for IPM in field crops. It contains eight original research articles and two review articles dealing with different aspects of IPM in some of the major field crops: Potato, Maize, Soybean, Sugar Beet, Barley, Rice, Eggplant and Quinoa as well as farmer education issues on IPM. The studies published refer to all the basic principles of IPM and give examples of their implementation in different crops and cropping systems. Research on various aspects of the implementation of IPM in crop production is a continuous need. The research presented helps to provide a mosaic picture with examples of how crop-specific, site-specific and knowledge-intensive IPM practices should be considered and translated into workable practices.
Research & information: general --- Biology, life sciences --- Technology, engineering, agriculture --- Spodoptera frugiperda --- farmers' knowledge --- perception --- pest management practices --- maize yield losses --- damage severity --- fall armyworm --- sugar beet --- degradation --- residues --- neonicotinoids --- imidacloprid --- thiamethoxam --- malt barley --- barley net blotch --- barley leaf scald --- nitrogen rate --- genotype --- crop residues --- biodiversity --- biopesticides --- conventional insecticides --- crop farming --- ecosystem health --- environmental protection --- insect ecology --- natural enemies --- pest control --- sustainable agriculture --- quinoa --- Eurysacca melanocampta --- Macrosiphum euphorbiae --- Liriomyza huidobrensis --- Frankliniella occidentalis --- IPM --- Peru --- antibiosis --- antixenosis --- tolerance --- eggplant cultivars --- green peach aphid --- alien pest --- Italy --- Oryza sativa --- phytosanitary measures --- rice root-knot nematode --- trap crop technique --- upland rice cultivation --- click beetle --- crop damage --- integrated pest management --- risk assessment --- pest monitoring --- biocontrol --- landscape feature --- habitat manipulation --- companion plant --- mutual fund --- soybean --- pre-sowing soil activities --- soil fauna --- ground beetles --- dominance --- frequency --- Diabrotica virgifera virgifera --- Bt toxins --- resistance --- geometric morphometrics --- SNPs --- Spodoptera frugiperda --- farmers' knowledge --- perception --- pest management practices --- maize yield losses --- damage severity --- fall armyworm --- sugar beet --- degradation --- residues --- neonicotinoids --- imidacloprid --- thiamethoxam --- malt barley --- barley net blotch --- barley leaf scald --- nitrogen rate --- genotype --- crop residues --- biodiversity --- biopesticides --- conventional insecticides --- crop farming --- ecosystem health --- environmental protection --- insect ecology --- natural enemies --- pest control --- sustainable agriculture --- quinoa --- Eurysacca melanocampta --- Macrosiphum euphorbiae --- Liriomyza huidobrensis --- Frankliniella occidentalis --- IPM --- Peru --- antibiosis --- antixenosis --- tolerance --- eggplant cultivars --- green peach aphid --- alien pest --- Italy --- Oryza sativa --- phytosanitary measures --- rice root-knot nematode --- trap crop technique --- upland rice cultivation --- click beetle --- crop damage --- integrated pest management --- risk assessment --- pest monitoring --- biocontrol --- landscape feature --- habitat manipulation --- companion plant --- mutual fund --- soybean --- pre-sowing soil activities --- soil fauna --- ground beetles --- dominance --- frequency --- Diabrotica virgifera virgifera --- Bt toxins --- resistance --- geometric morphometrics --- SNPs
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