Narrow your search
Listing 1 - 5 of 5
Sort by
Bacteriophage ecology
Author:
ISBN: 9780521858458 9780511541483 9780511397103 0511397100 9780511399831 0511399839 9780511402517 0511402511 0511541481 0521858453 1107177332 1281383651 9786611383657 0511397879 0511396376 0511398654 Year: 2008 Publisher: Cambridge New York Cambridge University Press

Loading...
Export citation

Choose an application

Bookmark

Abstract

Bacteriophages, or phages, are viruses that infect bacteria and are believed to be the most abundant and genetically diverse organisms on Earth. As such, their ecology is vast both in quantitative and qualitative terms. Their abundance makes an understanding of phage ecology increasingly relevant to bacterial ecosystem ecology, bacterial genomics and bacterial pathology. Abedon provides the first text on phage ecology for almost 20 years. Written by leading experts, synthesizing the three key approaches to studying phage ecology, namely studying them in natural environments (in situ), experimentally in the lab, or theoretically using mathematical or computer models. With strong emphasis on microbial population biology and distilling cutting-edge research into basic principles, this book will complement other currently available volumes. It will therefore serve as an essential resource for graduate students and researchers, particularly those with an interest in phage ecology and evolutionary biology.

Viral ecology
Author:
ISBN: 9780123626752 0123626757 9781435608030 1435608038 0080543561 9780080543567 1281033057 9781281033055 9786611033057 Year: 2000 Publisher: San Diego Academic Press

Loading...
Export citation

Choose an application

Bookmark

Abstract

Viral Ecology defines and explains the ecology of viruses by examining their interactions with their hosting species, including the types of transmission cycles that have evolved, encompassing principal and alternate hosts, vehicles, and vectors. It examines virology from an organismal biology approach, focusing on the concept that viral infections represent areas of overlap in the ecology of viruses, their hosts, and their vectors.Key Features* The relationship between viruses and their hosting species* The concept that viral interactions with their hosts represents a h


Book
The Biological Role of a Virus
Authors: ---
ISBN: 9783030853952 Year: 2022 Publisher: Cham Springer International Publishing :Imprint: Springer

Loading...
Export citation

Choose an application

Bookmark

Abstract

This book answers the question "What is it that viruses do?" by presenting three aspects of viral ecology.The first aspect explains how viruses affect the population diversity and energetics of their host communities. Perhaps the most notable example of this concept is our understanding that primary production within ecosystems often depends upon those viruses which serve as controllers of nutrient recycling, connecting the aquatic and terrestrial realms in ways that can be assessed locally and globally.The second aspect describes genetic partnerships which exist between hosts and their viruses. These include processes termed endogeny and lysogeny by which the host carries at least a partial genomic copy of the virus. Fluidity of these collective genomes is expressed on an evolutionary time scale and the mutual life cycles which they produce represent a forging of shared genomic fate that obligates partnership of the virus and its host. The viral sequences represent a source of potential benefit as well as potential peril for the host and can implement phenotypic changes in the host. Hosts often use those changes as tools. As humans, the most notable example would be that mammals rely upon temporary activation of their endogenous viral genes in order to successfully develop a placenta.The third aspect is defending the health of a host, which relies upon activity in two directions. Hosts often use their captured viral genes to identify and subsequently direct battle against invading viruses. This natural concept has been engineered for combating cancer, is useful for suppressing the detrimental consequences of genetic diseases, and has been developed to create targeted antiviral vaccines. But, the defense has to work in two directions and the host can use other symbiotic microorganisms as protection against its viruses.This book will appeal to a wide readership by providing a broad perspective of viral ecology, and all scientists will find it helpful for gaining a view of fields beyond their specialization.


Dissertation
Study of the diversity and ecology of plant viruses circulating in Asteraceae with a particular focus on invasive goldenrods
Authors: --- --- --- --- --- et al.
Year: 2024 Publisher: Liège Université de Liège (ULiège)

Loading...
Export citation

Choose an application

Bookmark

Abstract

Exchanges of microorganisms frequently occur between wild and cultivated plant populations, with the natural compartment significantly influencing pathogenic epidemics in crops. Wild populations comprise various plant species from different families, including some invasive species, which can harbour plant viruses. Most of these viruses are asymptomatic in wild plants due to long-term virus-host coevolution but they could be more virulent in crops or in mixed-infection with other viruses.
This master thesis explored the diversity and ecology of viruses infecting Asteraceae family, with a specific focus on invasive goldenrods, particularly Solidago canadensis and Solidago gigantea originated from North America and present in Belgium since the 1860s. To achieve this principal objective, the host range of Verbena latent virus (VeLV, Carlavirus, Betaflexiviridae), a virus newly identified as infecting goldenrod, the virus range of goldenrods, the prevalence of four viruses [VeLV, two novel Genomoviridae (GV1 and GV2) and one novel Tombusviridae (TV)] in Belgian goldenrods were investigated through bioinformatics, two-year field surveys and mechanical inoculation.
Bioinformatic analyses allowed to discover a putative novel host of VeLV that is the common sneezeweed Helenium autumnale L. (Asteraceae), as well as a putative novel Carlavirus species close to potato virus H isolated from Tetraena mongolica Maxim. (Zygophyllaceae). Data mining of Solidago sp. revealed two new putative partitiviruses (belonging to Alphapartitivirus and Deltapartitivirus genera) in Solidago canadensis and one new alphaendornavirus in S. decurrens. In further analyses, genomes of these putative novel virus species should be annotated and their biology knowledge deepened.
During the 2024 survey, the high prevalence of VeLV was confirmed in the site first identified in 2023 as containing VeLV, suggesting that goldenrods could act as a reservoir for this virus. For the three other viruses (GV1, GV2 and TV), following 2023 results, three sites and three subsites were sampled to study viral prevalence. GV1 and GV2, a priori identified as belonging to Gemycircularvirus genus presented different patterns of distribution within and among sites suggesting a difference of transmission pathways between the two viruses. Moreover, the GV1 did not seem to be present in woody environments and showed contrasted prevalences between sites with large and small populations of goldenrods. This could be related to the sampling frequency or goldenrod density. The novel tombusvirus (TV) was identified in 2023 but not in 2024 in the same site, suggesting its very low prevalence in Solidago population. However, to properly correlate field observations to prevalence patterns of these viruses more fields and plants should be investigated.
Mechanical transmission assays conducted for VeLV did not work for any of the tested plants. This observation could be attributed to issues with the inoculation process or with the virus to be mechanically transmitted. To potentially obtain more successful results, alternative transmission methods, such as vector-mediated transmission or other mechanical inoculation using antioxidants, reactivation on the virus on tobacco and optimized environmental conditions could be investigated.
To conclude, this master thesis paved the way for understanding the viral diversity in invasive goldenrods and it highlighted the complexity of studying plant viruses within dynamic ecosystems. Finally, this research outlined pathways for further analyses to fully understand the impact of invasive species in viral ecology. Des échanges de microorganismes se produisent fréquemment entre les populations de plantes sauvages et cultivées, le compartiment naturel influençant de manière significative les épidémies dans les cultures. Les populations sauvages comprennent diverses espèces de plantes provenant de différentes familles, y compris des espèces invasives, pouvant porter un ensemble de virus. La plupart de ces virus sont asymptomatiques chez les plantes sauvages en raison de la coévolution à long terme entre le virus et l'hôte, mais ils pourraient être plus virulents dans les cultures ou lors d'infections mixtes avec d'autres virus.
Ce Travail de Fin d’Etudes a exploré la diversité et l'écologie des virus infectant la famille des Asteraceae, en se concentrant spécifiquement sur les solidages invasifs, en particulier Solidago canadensis et Solidago gigantea, originaires d'Amérique du Nord et présents en Belgique depuis les années 1860. Pour atteindre cet objectif principal, la gamme d'hôtes du Verbena latent virus (VeLV, Carlavirus, Betaflexiviridae), un virus nouvellement identifié comme infectant le solidage, la gamme de virus du solidage, la prévalence de quatre virus [VeLV, deux nouveaux Genomoviridae (GV1 et GV2) et un nouveau Tombusviridae (TV)] dans les solidages belges ont été étudiés par bioinformatique, par des études de terrain sur deux ans et par inoculation mécanique.
Les analyses bioinformatiques ont permis de découvrir un nouvel hôte potentiel du VeLV qui est l’hélénie d’automne, Helenium autumnale L. (Asteraceae), ainsi qu'une nouvelle espèce potentielle du genre Carlavirus proche du virus H de la pomme de terre isolée de Tetraena mongolica Maxim. (Zygophyllaceae). L’exploration des données de Solidago sp. a révélé deux nouveaux potentiels partitivirus (appartenant aux genres Alphapartitivirus et Deltapartitivirus) dans Solidago canadensis et un nouvel alphaendornavirus dans S. decurrens. Par la suite, ces nouveaux génomes devraient être annotés et la connaissance biologique de ces potentiels nouveaux virus devrait être approfondie.
La haute prévalence du VeLV a été confirmée lors du relevé de 2024 sur le site où il avait d’abord été identifié en 2023 suggérant que le solidage pourrait être un réservoir de ce virus. Pour les trois autres virus (GV1, GV2 et TV), suite aux résultats de 2023, trois sites et trois sous-sites ont été échantillonnés pour étudier leur prévalence. GV1 et GV2, a priori appartenant au genre Gemycircularvirus, ont présenté des schémas de distribution différents entre et au sein des sites, suggérant des voies de transmission distinctes. De plus, GV1 ne semblait pas présent dans les environnements boisés et montrait une prévalence contrastée entre les sites avec grandes et petites populations de solidages. Cela pourrait être lié à la fréquence d'échantillonnage ou à la densité de solidages. Le nouveau tombusvirus (TV) a été identifié en 2023 mais non détecté en 2024 sur le même site, suggérant une prévalence très faible dans les populations de Solidago. Cependant, pour corréler correctement les observations de terrain et la prévalence de ces virus, il est nécessaire d'examiner davantage de champs et de plantes.
Les tests de transmission mécanique réalisés pour le VeLV n'ont fonctionné pour aucune des plantes testées. Cette observation pourrait être attribuée à des problèmes liés au processus d'inoculation ou à des difficultés à transmettre le virus mécaniquement. Pour obtenir des résultats plus probants, d'autres méthodes de transmission, telles que la transmission par vecteur ou d'autres inoculations mécaniques utilisant des antioxydants, une réactivation du virus sur tabac et des conditions environnementales optimisées pourraient être étudiées.
En conclusion, ce mémoire a posé les bases pour la compréhension de la diversité virale des solidages invasifs et a mis en évidence la complexité de l'étude des phytovirus dans les écosystèmes dynamiques. Enfin, cette recherche a établi les voies pour de futures analyses afin de comprendre pleinement l'impact des espèces invasives sur l'écologie virale.


Book
New Insights into Parvovirus Research
Author:
ISBN: 3039283111 3039283103 Year: 2020 Publisher: MDPI - Multidisciplinary Digital Publishing Institute

Loading...
Export citation

Choose an application

Bookmark

Abstract

Viruses in the Parvoviridae family constitute one of the most diverse and intriguing fields of research. While they all share an ssDNA genome and a small capsid, they can differ widely in structure, genome organization and expression, virus–cell interaction, and impact on the host. Exploring such diversity and unraveling the inherent complexity in these apparently simple viruses is an ongoing endeavor and commitment for the scientific community. The translational implications of research on parvoviruses are relevant. Within the family, some viruses are important human and veterinary pathogens, in need of diagnostic methods and antiviral strategies; other viruses have long been studied and engineered as tools for oncolytic therapy, or as sophisticated gene delivery vectors, and can now display their wide and expanding applicative potential. This Special Issue of Viruses collects recent contributions in the field of parvovirus research, with a focus on new insights and research on unresolved issues, as well as new approaches exploiting systemic methodologies. Evolution, structural biology, viral replication, virus–host interaction, pathogenesis and immunity, and viral oncotherapy are a selection of the topics addressed in the issue that can be of relevance to the community involved in parvovirus research and of interest to a wider audience.

Keywords

antivirals --- Bombyx mori bidensovirus --- Bocaparvovirus --- human bocavirus 1 --- equine parvovirus-hepatitis --- NS2 --- NS1 --- X-ray crystallography --- BIRC3 (cIAP-2) --- glycans --- children --- antibody interactions --- new viruses --- alpaca --- cidofovir --- rodent protoparvoviruses --- clinical trials --- structural biology --- DNA virus --- human bocavirus --- caspase-3 --- viral communities --- uncoating --- PLA2 --- phospholipase-A2 --- oncolytic virus immune therapy --- Parvoviridae --- viral ecology --- Cryo-EM --- AAV --- metagenomics --- phylogeny --- oncolytic viruses --- mite --- parvovirus evolution --- Carnivore protoparvovirus 1 --- adeno-associated virus --- telbivudine --- capsid stability --- virus --- homology modeling --- human airway epithelia --- sequence analysis --- acute gastroenteritis --- bisulfite PCR --- next-generation sequencing --- single stranded DNA virus --- overlapping promoters --- virus diversity --- prognosis --- oncolytic activity --- genome --- hydroxyurea --- Lepidoptera --- genome externalization --- antiviral compounds --- circulating angiogenic cells --- tumor microenvironment --- coumarin derivatives --- nuclear targeting --- densovirus --- receptor interactions --- cell cycle arrest --- transcription profile --- brincidofovir --- canine parvovirus --- endogenous viral elements --- inflammatory cardiomyopathy --- erythroid progenitor cells --- RNA-seq --- insect --- chapparvovirus --- RT-qPCR --- trafficking --- AAV2 --- agricultural pests --- Adeno-associated virus --- myocarditis --- diagnosis --- parvovirus --- feline panleukopenia virus --- chitin --- B19V --- transcription mapping --- flavonoids --- immunomodulation --- erythrovirus --- apoptosis --- adenoviral vector --- anti-cancer --- divalent cations --- protease --- genetics --- preclinical --- arthropod --- peritrophins --- biocontrol --- dilated cardiomyopathy --- insect parvovirus --- combination therapies --- intravenous immunoglobulin (IVIG) --- virus phylogeny --- evolution --- second generation parvovirus treatments --- commercial horse serum --- parvovirus B19 --- canine chapparvovirus --- CpG methylation --- RACE --- H-1PV --- viral metagenomics --- horses

Listing 1 - 5 of 5
Sort by