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Marine organisms are a treasure trove for the discovery of novel natural products, and, thus, marine natural products have been a focus of interest for researchers for decades. Some marine bacteria are prolific producers of natural products, occurring either free-living or, as recently shown, in symbiosis with marine animals. Recent advances in DNA sequencing have led to an enormous increase in published bacterial genomes and bioinformatics tools to analyze natural product biosynthetic potential by various “genome mining” approaches. Similarly, analytical NMR and MS methods for the characterization and comparison of metabolomes of natural product producers have advanced. Novel interdisciplinary approaches combine genomics and metabolomics data for accelerated and targeted natural product discovery. This Special Issue invites articles from both genomics- and metabolomics-driven studies on marine bacteria with a focus on natural product discovery and characterization. We particularly welcome articles that combine genomics and metabolomic approaches for the dereplication and characterization of marine bacterial natural products.
Moorena bouillonii --- marine natural products --- chemogeography --- metabolomics --- natural products --- dereplication --- antibiotics --- marine sponges --- plant pathogen --- cyclodepsipeptides --- marine Actinobacteria --- Streptomyces spp. --- antibiotic --- sea cucumber --- HCV --- Actinobacteria --- marine --- Polar --- genomics --- specialised metabolites --- chitin --- chitinase --- chitin degradation machinery --- Pseudoalteromonas --- secondary metabolites --- bacterial natural products --- mass spectrometry --- genome mining --- paired omics --- keratinases --- keratinolytic proteases --- marine-derived Streptomyces --- genomic comparison --- cyanobacteria --- symbionts --- comparative genomics --- biosynthetic gene clusters --- Indonesia --- biodiversity --- novel antibiotics --- drug screening --- bioactivity --- gene cluster networking --- GNPS --- enterococci --- genome-wide analysis --- bacteriocins --- probiotics --- wild marine species --- Neolyngbya --- anticancer --- drug discovery --- South China Sea --- wenchangamide --- Moorea producens --- CuSO4·5H2O assisted --- differential gDNA isolation --- filamentous bacteria --- micrococcin P1 and P2 --- stalked diatoms
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This book presents contributions from scientists who are directly involved in the potential of marine enzymes as useful tools in biocatalysis; the results of enzymatic bioprospecting in gross marine environments are acknowledged, including two review articles on general enzymatic processes and microalgal enzymes. In addition, studies on structural characterizations, biological functions and aspects related to the complexity of marine enzyme-based bioprocesses are discussed. Prominent conclusions by many scientists in the field of marine biotechnology emphasize that, due to marine biological diversity and the specificity of biological marine metabolisms, the study of biocatalysts on a global scale from this environment is just starting, and possesses huge potential for the development of applications with industrial benefits.
Research & information: general --- Biology, life sciences --- metalloprotease --- adsorption analysis --- molecular docking --- affinity purification --- aminophenylboronic acid --- alginate degradation --- 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH) metabolism --- Bacteroidetes --- Proteobacteria --- Flavobacterium --- 2-keto-3-deoxy-d-gluconate (KDG) kinase --- 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase --- alginate-derived products --- marine enzymes --- biocatalysts --- bioprocesses --- biorefinery --- seafood --- marine biomarkers --- collagenase --- fermentation optimization --- collagen --- Pseudoalteromonas --- antioxidant peptides --- microcystin-degrading bacteria --- mycotoxin --- protease --- esterase --- inhibitor --- marine agent --- Catenovulum --- alkaline and cold-adapted dextranase --- isomaltoogligosaccharides --- biofilm --- dental caries --- growing cells --- resting cells --- asymmetric reduction --- marine fungi --- chiral alcohols --- alginate lyase --- marine bacterium --- Bacillus sp. Alg07 --- purification --- alginate oligosaccharides --- Vibrio weizhoudaoensis --- PL7 family --- salt-activated enzyme --- Serratia marcescens --- polyM-specific --- oligosaccharides --- Isoptericola halotolerans --- bifunctional alginate lyase --- α-d-galactosidase --- homology model --- GH 36 family --- mutation --- transglycosylation --- marine bacteria --- Pseudoalteromonas sp. KMM 701 --- leucine dehydrogenase --- cold-adapted --- Antarctic bacterium --- sea-ice --- homology modeling --- fucoidan --- endo-fucoidanase --- galactofucan --- molecular stabilisation --- Sargassum mcclurei --- Turbinaria ornata --- Alteromonas --- deep sea --- cold-adapted enzyme --- β-galactosidase --- lactose-free milk --- chitosanases --- chitin deacetylase --- deacetylation patterns --- chitooligosaccharides --- separating --- detecting --- expression --- deep-sea enzyme --- pCold vector --- Ascophyllum nodosum --- algal cell wall degrading enzymes --- enzyme-assisted extraction --- ichip device --- quorum quenching enzyme --- error prone PCR --- high-throughput screening --- site-directed mutagenesis --- catalytic ability --- Pectobacterium carotovorum subsp. carotovorum (Pcc) --- Alginate lyase --- Thermo-tolerant --- pH-stability --- Endo-manner --- Vibrio sp. SY01 --- polysaccharide lyase of family 6 --- characterization --- degradation pattern --- microalgae --- enzymes --- marine biotechnology --- -omics technologies --- heterologous expression --- homologous expression
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This book presents contributions from scientists who are directly involved in the potential of marine enzymes as useful tools in biocatalysis; the results of enzymatic bioprospecting in gross marine environments are acknowledged, including two review articles on general enzymatic processes and microalgal enzymes. In addition, studies on structural characterizations, biological functions and aspects related to the complexity of marine enzyme-based bioprocesses are discussed. Prominent conclusions by many scientists in the field of marine biotechnology emphasize that, due to marine biological diversity and the specificity of biological marine metabolisms, the study of biocatalysts on a global scale from this environment is just starting, and possesses huge potential for the development of applications with industrial benefits.
metalloprotease --- adsorption analysis --- molecular docking --- affinity purification --- aminophenylboronic acid --- alginate degradation --- 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH) metabolism --- Bacteroidetes --- Proteobacteria --- Flavobacterium --- 2-keto-3-deoxy-d-gluconate (KDG) kinase --- 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase --- alginate-derived products --- marine enzymes --- biocatalysts --- bioprocesses --- biorefinery --- seafood --- marine biomarkers --- collagenase --- fermentation optimization --- collagen --- Pseudoalteromonas --- antioxidant peptides --- microcystin-degrading bacteria --- mycotoxin --- protease --- esterase --- inhibitor --- marine agent --- Catenovulum --- alkaline and cold-adapted dextranase --- isomaltoogligosaccharides --- biofilm --- dental caries --- growing cells --- resting cells --- asymmetric reduction --- marine fungi --- chiral alcohols --- alginate lyase --- marine bacterium --- Bacillus sp. Alg07 --- purification --- alginate oligosaccharides --- Vibrio weizhoudaoensis --- PL7 family --- salt-activated enzyme --- Serratia marcescens --- polyM-specific --- oligosaccharides --- Isoptericola halotolerans --- bifunctional alginate lyase --- α-d-galactosidase --- homology model --- GH 36 family --- mutation --- transglycosylation --- marine bacteria --- Pseudoalteromonas sp. KMM 701 --- leucine dehydrogenase --- cold-adapted --- Antarctic bacterium --- sea-ice --- homology modeling --- fucoidan --- endo-fucoidanase --- galactofucan --- molecular stabilisation --- Sargassum mcclurei --- Turbinaria ornata --- Alteromonas --- deep sea --- cold-adapted enzyme --- β-galactosidase --- lactose-free milk --- chitosanases --- chitin deacetylase --- deacetylation patterns --- chitooligosaccharides --- separating --- detecting --- expression --- deep-sea enzyme --- pCold vector --- Ascophyllum nodosum --- algal cell wall degrading enzymes --- enzyme-assisted extraction --- ichip device --- quorum quenching enzyme --- error prone PCR --- high-throughput screening --- site-directed mutagenesis --- catalytic ability --- Pectobacterium carotovorum subsp. carotovorum (Pcc) --- Alginate lyase --- Thermo-tolerant --- pH-stability --- Endo-manner --- Vibrio sp. SY01 --- polysaccharide lyase of family 6 --- characterization --- degradation pattern --- microalgae --- enzymes --- marine biotechnology --- -omics technologies --- heterologous expression --- homologous expression
Choose an application
Marine organisms are a treasure trove for the discovery of novel natural products, and, thus, marine natural products have been a focus of interest for researchers for decades. Some marine bacteria are prolific producers of natural products, occurring either free-living or, as recently shown, in symbiosis with marine animals. Recent advances in DNA sequencing have led to an enormous increase in published bacterial genomes and bioinformatics tools to analyze natural product biosynthetic potential by various “genome mining” approaches. Similarly, analytical NMR and MS methods for the characterization and comparison of metabolomes of natural product producers have advanced. Novel interdisciplinary approaches combine genomics and metabolomics data for accelerated and targeted natural product discovery. This Special Issue invites articles from both genomics- and metabolomics-driven studies on marine bacteria with a focus on natural product discovery and characterization. We particularly welcome articles that combine genomics and metabolomic approaches for the dereplication and characterization of marine bacterial natural products.
Medicine --- Moorena bouillonii --- marine natural products --- chemogeography --- metabolomics --- natural products --- dereplication --- antibiotics --- marine sponges --- plant pathogen --- cyclodepsipeptides --- marine Actinobacteria --- Streptomyces spp. --- antibiotic --- sea cucumber --- HCV --- Actinobacteria --- marine --- Polar --- genomics --- specialised metabolites --- chitin --- chitinase --- chitin degradation machinery --- Pseudoalteromonas --- secondary metabolites --- bacterial natural products --- mass spectrometry --- genome mining --- paired omics --- keratinases --- keratinolytic proteases --- marine-derived Streptomyces --- genomic comparison --- cyanobacteria --- symbionts --- comparative genomics --- biosynthetic gene clusters --- Indonesia --- biodiversity --- novel antibiotics --- drug screening --- bioactivity --- gene cluster networking --- GNPS --- enterococci --- genome-wide analysis --- bacteriocins --- probiotics --- wild marine species --- Neolyngbya --- anticancer --- drug discovery --- South China Sea --- wenchangamide --- Moorea producens --- CuSO4·5H2O assisted --- differential gDNA isolation --- filamentous bacteria --- micrococcin P1 and P2 --- stalked diatoms --- Moorena bouillonii --- marine natural products --- chemogeography --- metabolomics --- natural products --- dereplication --- antibiotics --- marine sponges --- plant pathogen --- cyclodepsipeptides --- marine Actinobacteria --- Streptomyces spp. --- antibiotic --- sea cucumber --- HCV --- Actinobacteria --- marine --- Polar --- genomics --- specialised metabolites --- chitin --- chitinase --- chitin degradation machinery --- Pseudoalteromonas --- secondary metabolites --- bacterial natural products --- mass spectrometry --- genome mining --- paired omics --- keratinases --- keratinolytic proteases --- marine-derived Streptomyces --- genomic comparison --- cyanobacteria --- symbionts --- comparative genomics --- biosynthetic gene clusters --- Indonesia --- biodiversity --- novel antibiotics --- drug screening --- bioactivity --- gene cluster networking --- GNPS --- enterococci --- genome-wide analysis --- bacteriocins --- probiotics --- wild marine species --- Neolyngbya --- anticancer --- drug discovery --- South China Sea --- wenchangamide --- Moorea producens --- CuSO4·5H2O assisted --- differential gDNA isolation --- filamentous bacteria --- micrococcin P1 and P2 --- stalked diatoms
Choose an application
This book presents contributions from scientists who are directly involved in the potential of marine enzymes as useful tools in biocatalysis; the results of enzymatic bioprospecting in gross marine environments are acknowledged, including two review articles on general enzymatic processes and microalgal enzymes. In addition, studies on structural characterizations, biological functions and aspects related to the complexity of marine enzyme-based bioprocesses are discussed. Prominent conclusions by many scientists in the field of marine biotechnology emphasize that, due to marine biological diversity and the specificity of biological marine metabolisms, the study of biocatalysts on a global scale from this environment is just starting, and possesses huge potential for the development of applications with industrial benefits.
Research & information: general --- Biology, life sciences --- metalloprotease --- adsorption analysis --- molecular docking --- affinity purification --- aminophenylboronic acid --- alginate degradation --- 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH) metabolism --- Bacteroidetes --- Proteobacteria --- Flavobacterium --- 2-keto-3-deoxy-d-gluconate (KDG) kinase --- 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase --- alginate-derived products --- marine enzymes --- biocatalysts --- bioprocesses --- biorefinery --- seafood --- marine biomarkers --- collagenase --- fermentation optimization --- collagen --- Pseudoalteromonas --- antioxidant peptides --- microcystin-degrading bacteria --- mycotoxin --- protease --- esterase --- inhibitor --- marine agent --- Catenovulum --- alkaline and cold-adapted dextranase --- isomaltoogligosaccharides --- biofilm --- dental caries --- growing cells --- resting cells --- asymmetric reduction --- marine fungi --- chiral alcohols --- alginate lyase --- marine bacterium --- Bacillus sp. Alg07 --- purification --- alginate oligosaccharides --- Vibrio weizhoudaoensis --- PL7 family --- salt-activated enzyme --- Serratia marcescens --- polyM-specific --- oligosaccharides --- Isoptericola halotolerans --- bifunctional alginate lyase --- α-d-galactosidase --- homology model --- GH 36 family --- mutation --- transglycosylation --- marine bacteria --- Pseudoalteromonas sp. KMM 701 --- leucine dehydrogenase --- cold-adapted --- Antarctic bacterium --- sea-ice --- homology modeling --- fucoidan --- endo-fucoidanase --- galactofucan --- molecular stabilisation --- Sargassum mcclurei --- Turbinaria ornata --- Alteromonas --- deep sea --- cold-adapted enzyme --- β-galactosidase --- lactose-free milk --- chitosanases --- chitin deacetylase --- deacetylation patterns --- chitooligosaccharides --- separating --- detecting --- expression --- deep-sea enzyme --- pCold vector --- Ascophyllum nodosum --- algal cell wall degrading enzymes --- enzyme-assisted extraction --- ichip device --- quorum quenching enzyme --- error prone PCR --- high-throughput screening --- site-directed mutagenesis --- catalytic ability --- Pectobacterium carotovorum subsp. carotovorum (Pcc) --- Alginate lyase --- Thermo-tolerant --- pH-stability --- Endo-manner --- Vibrio sp. SY01 --- polysaccharide lyase of family 6 --- characterization --- degradation pattern --- microalgae --- enzymes --- marine biotechnology --- -omics technologies --- heterologous expression --- homologous expression --- metalloprotease --- adsorption analysis --- molecular docking --- affinity purification --- aminophenylboronic acid --- alginate degradation --- 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH) metabolism --- Bacteroidetes --- Proteobacteria --- Flavobacterium --- 2-keto-3-deoxy-d-gluconate (KDG) kinase --- 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase --- alginate-derived products --- marine enzymes --- biocatalysts --- bioprocesses --- biorefinery --- seafood --- marine biomarkers --- collagenase --- fermentation optimization --- collagen --- Pseudoalteromonas --- antioxidant peptides --- microcystin-degrading bacteria --- mycotoxin --- protease --- esterase --- inhibitor --- marine agent --- Catenovulum --- alkaline and cold-adapted dextranase --- isomaltoogligosaccharides --- biofilm --- dental caries --- growing cells --- resting cells --- asymmetric reduction --- marine fungi --- chiral alcohols --- alginate lyase --- marine bacterium --- Bacillus sp. Alg07 --- purification --- alginate oligosaccharides --- Vibrio weizhoudaoensis --- PL7 family --- salt-activated enzyme --- Serratia marcescens --- polyM-specific --- oligosaccharides --- Isoptericola halotolerans --- bifunctional alginate lyase --- α-d-galactosidase --- homology model --- GH 36 family --- mutation --- transglycosylation --- marine bacteria --- Pseudoalteromonas sp. KMM 701 --- leucine dehydrogenase --- cold-adapted --- Antarctic bacterium --- sea-ice --- homology modeling --- fucoidan --- endo-fucoidanase --- galactofucan --- molecular stabilisation --- Sargassum mcclurei --- Turbinaria ornata --- Alteromonas --- deep sea --- cold-adapted enzyme --- β-galactosidase --- lactose-free milk --- chitosanases --- chitin deacetylase --- deacetylation patterns --- chitooligosaccharides --- separating --- detecting --- expression --- deep-sea enzyme --- pCold vector --- Ascophyllum nodosum --- algal cell wall degrading enzymes --- enzyme-assisted extraction --- ichip device --- quorum quenching enzyme --- error prone PCR --- high-throughput screening --- site-directed mutagenesis --- catalytic ability --- Pectobacterium carotovorum subsp. carotovorum (Pcc) --- Alginate lyase --- Thermo-tolerant --- pH-stability --- Endo-manner --- Vibrio sp. SY01 --- polysaccharide lyase of family 6 --- characterization --- degradation pattern --- microalgae --- enzymes --- marine biotechnology --- -omics technologies --- heterologous expression --- homologous expression
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