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This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. Methods to assess mitochondrial function is of great interest to neuroscientists studying chronic forms of neurodegeneration, including Parkinson's, Alzheimer's, ALS, Huntington's and other triplet repeat diseases, but also to those working on acute conditions such as stroke and traumatic brain injury. This volume covers research methods on how to assess the life cycle of mitochondria including trafficking, fusion, fission, and degradation. Multiple persp
Mitochondria. --- Phosphoprotein phosphatases. --- Protein kinases. --- Subcellular Fractions --- Nervous System --- Cells --- Organelles --- Metabolic Diseases --- DNA, Circular --- Cytoplasmic Structures --- DNA --- Cellular Structures --- Anatomy --- Nutritional and Metabolic Diseases --- Diseases --- Nucleic Acids --- Cytoplasm --- Intracellular Space --- Nucleic Acids, Nucleotides, and Nucleosides --- Chemicals and Drugs --- Mitochondria --- Mitochondrial Diseases --- DNA, Mitochondrial --- Neurons --- Protein kinase --- Protein phosphotransferases --- Phosphoprotein phosphohydrolases --- Protein phosphatases --- Protein phosphoesterases --- Protein phosphohydrolases --- Chondriosomes --- Phosphotransferases --- Phosphatases --- Cell organelles --- Protoplasm
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The aims of this volume are to highlight the tremendous pharmacological potential of protein kinase and protein phosphatase inhibitors, to provide a thorough overview of the most remarkable achievements in the field and to illustrate how beneficial these studies can be for the advancement of both basic knowledge on biological regulation and deregulation and for the clinical treatment of a wide spectrum of diseases. This goal is attained by contributions of leader investigators in the field, who address the issue from different angles.
Protein kinases --- Phosphoprotein phosphatases --- Inhibitors --- Phosphoprotein phosphohydrolases --- Protein phosphatases --- Protein phosphoesterases --- Protein phosphohydrolases --- Phosphatases --- Protein kinase --- Protein phosphotransferases --- Phosphotransferases --- Toxicology. --- Oncology . --- Pathology. --- Biochemistry. --- Pharmacology/Toxicology. --- Oncology. --- Medical Biochemistry. --- Biological chemistry --- Chemical composition of organisms --- Organisms --- Physiological chemistry --- Biology --- Chemistry --- Medical sciences --- Disease (Pathology) --- Diseases --- Medicine --- Medicine, Preventive --- Tumors --- Chemicals --- Pharmacology --- Poisoning --- Poisons --- Composition --- Toxicology --- Pharmacology. --- Medical biochemistry. --- Drug effects --- Medical pharmacology --- Chemotherapy --- Drugs --- Pharmacy --- Medical biochemistry --- Pathobiochemistry --- Pathological biochemistry --- Biochemistry --- Pathology --- Physiological effect
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Protein Phosphatase Protocols presents a broad range of protocols for the study of protein phosphatases, all written by experts and innovators from phosphatase laboratories around the world. This volume is a compendium of resources for the study of protein phosphatases and their potential as drug targets. Experimental methodologies are taken from proteomics, bioinformatics, genomics, biochemistry, RNAi, and genetics. Included protocols utilize several model organisms, including yeast, Drosophila, and various plant and human cells. Protein Phosphatase Protocols provides a concise introduction to protein phosphatase research, with particular attention to phosphatase families. Assays for identification, quantification, purification, and functional characterization are presented throughout in specific detail.
Phosphoprotein phosphatases --- Phosphoprotein Phosphatases --- analysis --- isolation and purification --- Phosphatases. --- Phosphoprotein phosphatases -- Laboratory manuals. --- Phosphoric Monoester Hydrolases --- Phosphoesterases --- Phosphohydrolases --- Phosphoprotein phosphohydrolases --- Protein phosphatases --- Protein phosphoesterases --- Protein phosphohydrolases --- Esterases --- Phosphatases --- Biochemistry. --- Cytology. --- Biochemistry, general. --- Cell Biology. --- Cell biology --- Cellular biology --- Biology --- Cells --- Cytologists --- Biological chemistry --- Chemical composition of organisms --- Organisms --- Physiological chemistry --- Chemistry --- Medical sciences --- Composition --- Phosphoprotein phosphatases - Laboratory manuals --- Phosphoprotein Phosphatases - analysis --- Phosphoprotein Phosphatases - isolation and purification
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The first of two new volumes covering mitochondria, this volume presents modern methods that have been developed to examine mitochondrial electron transport chain complexes, iron-sulfur proteins and reactive oxygen species. These new techniques provide investigators with sensitive, original approaches to the study of disease states associated with mitochondrial malfunction. The critically acclaimed laboratory standard for 40 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequ
Mitochondria. --- Electron Transport --- Reactive Oxygen Species --- Mitochondria --- Oxygen Compounds --- Metabolic Networks and Pathways --- Oxidation-Reduction --- Subcellular Fractions --- Biochemical Processes --- Organelles --- Free Radicals --- Inorganic Chemicals --- Biochemical Phenomena --- Cellular Structures --- Energy Metabolism --- Chemical Processes --- Cytoplasmic Structures --- Metabolism --- Cytoplasm --- Chemical Phenomena --- Chemicals and Drugs --- Metabolic Phenomena --- Cells --- Intracellular Space --- Phenomena and Processes --- Anatomy --- Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- Active oxygen. --- Electron transport. --- Protein kinases. --- Phosphoprotein phosphatases. --- Phosphoprotein phosphohydrolases --- Protein phosphatases --- Protein phosphoesterases --- Protein phosphohydrolases --- Protein kinase --- Protein phosphotransferases --- Oxygen radicals --- Reactive oxygen --- Singlet oxygen --- Superperoxide anion --- Chondriosomes --- Phosphatases --- Phosphotransferases --- Electrons --- Energy-band theory of solids --- Free electron theory of metals --- Transport theory --- Free radicals (Chemistry) --- Ionization of gases --- Oxygen --- Cell organelles --- Protoplasm
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In this second of two new volumes covering mitochondria, methods developed to assess the number and function of nuclear-encoded proteins in the mitochondrion are presented. Chapters focus on the regulation of mitochondrial function and mitochondrial diseases, with a section emphasizing the mitochondrial defects associated with type 2 diabetes.The critically acclaimed laboratory standard for 40 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. With more than 450 volumes published, each volume presents material that is rele
Biochemistry -- Periodicals. --- Enzymes -- Periodicals. --- Enzymes. --- Mitochondria. --- Mitochondrial pathology. --- Mitochondrial Diseases --- Phosphoprotein Phosphatases --- Mitochondria --- Protein Kinases --- Subcellular Fractions --- Phosphoric Monoester Hydrolases --- Organelles --- Metabolic Diseases --- Phosphotransferases (Alcohol Group Acceptor) --- Cellular Structures --- Nutritional and Metabolic Diseases --- Phosphotransferases --- Cytoplasmic Structures --- Esterases --- Hydrolases --- Diseases --- Cells --- Transferases --- Cytoplasm --- Enzymes --- Anatomy --- Intracellular Space --- Enzymes and Coenzymes --- Chemicals and Drugs --- Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- Phosphoprotein phosphatases. --- Protein kinases. --- Active oxygen. --- Electron transport. --- Phosphoprotein phosphohydrolases --- Protein phosphatases --- Protein phosphoesterases --- Protein phosphohydrolases --- Protein kinase --- Protein phosphotransferases --- Oxygen radicals --- Reactive oxygen --- Singlet oxygen --- Superperoxide anion --- Chondriosomes --- Phosphatases --- Electrons --- Energy-band theory of solids --- Free electron theory of metals --- Transport theory --- Free radicals (Chemistry) --- Ionization of gases --- Oxygen --- Cell organelles --- Protoplasm
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This book provides new and in-depth insights into molecular aspects of plant cell signaling in response to biotic, such as aphid- and grey mold disease-resistance, and abiotic stresses, such as soil salinity and drought stress, and additionally, functional analysis on signaling components involved in flowering, juvenility, GA signaling, and biosynthesis, and miRNA-regulated gene expression. Furthermore, plant acclimation was reported, with emphasis on mechanistic insights into the roles of brassinosteroids, cyclic AMP, and hydrogen sulfide, and the recent advances of transmembrane receptor-like kinases were refined. Clearly, plant cell signaling is an intensive topic and whether it is now or in the future, the emerging technology in functional analysis such as genome editing technologies, high-throughput technologies, integrative multiple-omics as well as bioinformatics can assist researchers to reveal novel aspects of the regulatory mechanisms of plant growth and development, and acclimation to environmental and biotic stresses. The achievement of such research will be useful in improving crop stress tolerances to increase agricultural productivity and sustainability for the food supply of the world.
salinity --- selenium (Se) --- crops --- reactive oxygen species (ROS) --- enzymatic anti-oxidative system --- drought --- GA --- DELLA --- ABF2 --- protein–protein interaction --- Arabidopsis --- endocytosis --- microRNAs --- miPEPs --- peptides --- development --- kinase --- receptor --- stress --- tobacco --- calcium --- calcite --- reactive oxygen species --- ion channels --- cellular signalization --- brassinosteroids --- receptor-like kinases --- GSK3-like kinases --- somatic embryogenesis receptor-like kinases --- protein phosphatases --- Malus domestica --- Rosaceae --- juvenility --- FLOWERING LOCUS C --- flowering --- Hydrogen sulfide --- S-sulfhydration --- plant hormone --- gasotransmitter --- disease resistance --- plant defense --- herbivore --- phytohormone --- plant biotic stress --- plant signalling --- Medicago truncatula --- abiotic stress --- cAMP --- cyclic nucleotides-gated channels --- plant innate immunity --- Botrytis cinerea --- tomato --- iprodione --- mutant --- transcriptome analysis --- metabolism --- catalytic activity --- dwarfism --- gene cloning --- MNP1 --- CPS --- ABA signaling --- brassinosteroid signaling cascade --- drought tolerance --- priming --- stress adaptation --- stress memory --- CRISPR/Cas9 --- DELLA/TVHYNP --- Dwarf --- GA20OX2 --- GA signaling --- n/a --- protein-protein interaction
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This book provides new and in-depth insights into molecular aspects of plant cell signaling in response to biotic, such as aphid- and grey mold disease-resistance, and abiotic stresses, such as soil salinity and drought stress, and additionally, functional analysis on signaling components involved in flowering, juvenility, GA signaling, and biosynthesis, and miRNA-regulated gene expression. Furthermore, plant acclimation was reported, with emphasis on mechanistic insights into the roles of brassinosteroids, cyclic AMP, and hydrogen sulfide, and the recent advances of transmembrane receptor-like kinases were refined. Clearly, plant cell signaling is an intensive topic and whether it is now or in the future, the emerging technology in functional analysis such as genome editing technologies, high-throughput technologies, integrative multiple-omics as well as bioinformatics can assist researchers to reveal novel aspects of the regulatory mechanisms of plant growth and development, and acclimation to environmental and biotic stresses. The achievement of such research will be useful in improving crop stress tolerances to increase agricultural productivity and sustainability for the food supply of the world.
Research & information: general --- Biology, life sciences --- salinity --- selenium (Se) --- crops --- reactive oxygen species (ROS) --- enzymatic anti-oxidative system --- drought --- GA --- DELLA --- ABF2 --- protein-protein interaction --- Arabidopsis --- endocytosis --- microRNAs --- miPEPs --- peptides --- development --- kinase --- receptor --- stress --- tobacco --- calcium --- calcite --- reactive oxygen species --- ion channels --- cellular signalization --- brassinosteroids --- receptor-like kinases --- GSK3-like kinases --- somatic embryogenesis receptor-like kinases --- protein phosphatases --- Malus domestica --- Rosaceae --- juvenility --- FLOWERING LOCUS C --- flowering --- Hydrogen sulfide --- S-sulfhydration --- plant hormone --- gasotransmitter --- disease resistance --- plant defense --- herbivore --- phytohormone --- plant biotic stress --- plant signalling --- Medicago truncatula --- abiotic stress --- cAMP --- cyclic nucleotides-gated channels --- plant innate immunity --- Botrytis cinerea --- tomato --- iprodione --- mutant --- transcriptome analysis --- metabolism --- catalytic activity --- dwarfism --- gene cloning --- MNP1 --- CPS --- ABA signaling --- brassinosteroid signaling cascade --- drought tolerance --- priming --- stress adaptation --- stress memory --- CRISPR/Cas9 --- DELLA/TVHYNP --- Dwarf --- GA20OX2 --- GA signaling
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Phosphoric Monoester Hydrolases --- Esterases --- Hydrolases --- Enzymes --- Enzymes and Coenzymes --- Phosphoprotein Phosphatases --- Chemicals and Drugs --- Human Anatomy & Physiology --- Health & Biological Sciences --- Animal Biochemistry --- Casein Phosphatase --- Ecto-Phosphoprotein Phosphatase --- Nuclear Protein Phosphatase --- Phosphohistone Phosphatase --- Phosphoprotein Phosphatase-2C --- Phosphoseryl-Protein Phosphatase --- Protein Phosphatase C --- Protein Phosphatase C-I --- Protein Phosphatase C-II --- Protein Phosphatase H-II --- Protein-Serine-Threonine Phosphatase --- Protein-Threonine Phosphatase --- Serine-Threonine Phosphatase --- Threonine Phosphatase --- Phosphoprotein Phosphatase --- Phosphoprotein Phosphohydrolase --- Protein Phosphatases --- Ecto Phosphoprotein Phosphatase --- Phosphatase C, Protein --- Phosphatase C-I, Protein --- Phosphatase C-II, Protein --- Phosphatase H-II, Protein --- Phosphatase, Casein --- Phosphatase, Ecto-Phosphoprotein --- Phosphatase, Nuclear Protein --- Phosphatase, Phosphohistone --- Phosphatase, Phosphoprotein --- Phosphatase, Phosphoseryl-Protein --- Phosphatase, Protein-Serine-Threonine --- Phosphatase, Protein-Threonine --- Phosphatase, Serine-Threonine --- Phosphatase, Threonine --- Phosphatase-2C, Phosphoprotein --- Phosphatases, Phosphoprotein --- Phosphatases, Protein --- Phosphohydrolase, Phosphoprotein --- Phosphoprotein Phosphatase 2C --- Phosphoseryl Protein Phosphatase --- Protein Phosphatase C I --- Protein Phosphatase C II --- Protein Phosphatase H II --- Protein Phosphatase, Nuclear --- Protein Serine Threonine Phosphatase --- Protein Threonine Phosphatase --- Serine Threonine Phosphatase --- Coenzymes and Enzymes --- Biocatalysts --- Phosphatases --- Phosphohydrolases --- Phosphomonoesterases --- Hydrolases, Phosphoric Monoester
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Mitochondria are subcellular organelles evolved by the endosymbiosis of bacteria with eukaryotic cells. They are the main source of ATP in the cell and engaged in other aspects of cell metabolism and cell function, including the regulation of ion homeostasis, cell growth, redox status, and cell signaling. Due to their central role in cell life and death, mitochondria are also involved in the pathogenesis and progression of human diseases/conditions, including neurodegenerative and cardiovascular disorders, cancer, diabetes, inflammation, and aging. However, despite the increasing number of studies, precise mechanisms whereby mitochondria are involved in the regulation of basic physiological functions, as well as their role in the cell under pathophysiological conditions, remain unknown. A lack of in-depth knowledge of the regulatory mechanisms of mitochondrial metabolism and function, as well as interplay between the factors that transform the organelle from its role in pro-survival to pro-death, have hindered the development of new mitochondria-targeted pharmacological and conditional approaches for the treatment of human diseases. This book highlights the latest achievements in elucidating the role of mitochondria under physiological conditions, in various cell/animal models of human diseases, and in patients.
hypoglycemia --- sodium dichloroacetate --- pyruvate dehydrogenase kinase --- pyruvate dehydrogenase --- oxidative stress --- neuron death --- cholangiocellular carcinoma --- mitochondria --- energy metabolism --- oxidative phosphorylation --- 4-HNE --- DRP1 --- ERK1/2 --- hippocampus --- JNK --- mitochondrial dynamics --- PKA --- protein phosphatases --- TUNEL --- DDE --- high-fat diet --- mitochondrial UCP2 --- ROS --- antioxidant system --- uncoupling protein --- mitochondria: energy metabolism --- lipid handling --- fatty acid oxidation --- potassium channel --- reactive oxygen species --- antioxidants --- life span --- aging --- BKCa channels --- pravastatin --- gemfibrozil --- liver --- colon --- mitochondrial function --- cyclosporin A --- mitochondria calcium buffering --- mitochondria bioenergetics --- mitochondria permeability transition pore --- inorganic phosphate --- hepatic fibrogenesis --- HtrA2/Omi --- reactive oxygen species stress --- mitochondrial homeostasis --- complex I (CI) deficiency --- metabolome and proteome profiling --- reactive oxygen species (ROS) --- respirasome assembly --- electron tunneling (ET) --- perilipin 5 --- lipid droplet --- H9c2 cardiomyoblasts --- adenine nucleotide translocase --- respiratory supercomplexes --- ETC complexes --- dentate granule cell --- epilepsy --- hyperforin --- LONP1 --- neuroprotection --- pilocarpine --- seizure --- siRNA --- cardioprotection --- mitochondrial permeability transition pores --- mitochondrial connexin 43 --- cardiolipin --- iron overload --- hepcidin --- transferrin --- ferritin --- ZIP --- inflammation --- mtDNA --- mitochondrial dysfunction --- muscle aging --- physical performance --- LHON --- Siberian population --- ancient mutation --- specific genetic background --- apoptosis --- human amniotic membrane --- mitochondrial cell death --- BAX --- BCL-2 --- tensile strength --- mitochondrial gene expression --- mtDNA transcription --- mtRNA --- post-transcriptional mtRNA processing --- dsRNA --- innate immunity --- interferon response --- amino acid neurotransmitter --- cerebellar amino acid metabolism --- hypoxia --- 2-oxoglutarate dehydrogenase --- tricarboxylic acid cycle --- heart --- cytoskeletal proteins --- mitochondrial interactions --- plectin --- tubulin beta --- signaling --- GW9662 --- ischemia reperfusion injury --- Langendorff --- myocardial --- pioglitazone --- redox state --- rosiglitazone --- TZD --- uncoupling --- ADP/ATP carrier --- KmADP --- dextran --- morphology --- cardiomyocytes --- telomere length --- telomerase activity --- development --- regeneration --- intranuclear mitochondria --- healthy cells --- electron and confocal microscopy --- signaling pathways --- ion homeostasis --- human diseases
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Mitochondria are subcellular organelles evolved by the endosymbiosis of bacteria with eukaryotic cells. They are the main source of ATP in the cell and engaged in other aspects of cell metabolism and cell function, including the regulation of ion homeostasis, cell growth, redox status, and cell signaling. Due to their central role in cell life and death, mitochondria are also involved in the pathogenesis and progression of human diseases/conditions, including neurodegenerative and cardiovascular disorders, cancer, diabetes, inflammation, and aging. However, despite the increasing number of studies, precise mechanisms whereby mitochondria are involved in the regulation of basic physiological functions, as well as their role in the cell under pathophysiological conditions, remain unknown. A lack of in-depth knowledge of the regulatory mechanisms of mitochondrial metabolism and function, as well as interplay between the factors that transform the organelle from its role in pro-survival to pro-death, have hindered the development of new mitochondria-targeted pharmacological and conditional approaches for the treatment of human diseases. This book highlights the latest achievements in elucidating the role of mitochondria under physiological conditions, in various cell/animal models of human diseases, and in patients.
Medicine --- hypoglycemia --- sodium dichloroacetate --- pyruvate dehydrogenase kinase --- pyruvate dehydrogenase --- oxidative stress --- neuron death --- cholangiocellular carcinoma --- mitochondria --- energy metabolism --- oxidative phosphorylation --- 4-HNE --- DRP1 --- ERK1/2 --- hippocampus --- JNK --- mitochondrial dynamics --- PKA --- protein phosphatases --- TUNEL --- DDE --- high-fat diet --- mitochondrial UCP2 --- ROS --- antioxidant system --- uncoupling protein --- mitochondria: energy metabolism --- lipid handling --- fatty acid oxidation --- potassium channel --- reactive oxygen species --- antioxidants --- life span --- aging --- BKCa channels --- pravastatin --- gemfibrozil --- liver --- colon --- mitochondrial function --- cyclosporin A --- mitochondria calcium buffering --- mitochondria bioenergetics --- mitochondria permeability transition pore --- inorganic phosphate --- hepatic fibrogenesis --- HtrA2/Omi --- reactive oxygen species stress --- mitochondrial homeostasis --- complex I (CI) deficiency --- metabolome and proteome profiling --- reactive oxygen species (ROS) --- respirasome assembly --- electron tunneling (ET) --- perilipin 5 --- lipid droplet --- H9c2 cardiomyoblasts --- adenine nucleotide translocase --- respiratory supercomplexes --- ETC complexes --- dentate granule cell --- epilepsy --- hyperforin --- LONP1 --- neuroprotection --- pilocarpine --- seizure --- siRNA --- cardioprotection --- mitochondrial permeability transition pores --- mitochondrial connexin 43 --- cardiolipin --- iron overload --- hepcidin --- transferrin --- ferritin --- ZIP --- inflammation --- mtDNA --- mitochondrial dysfunction --- muscle aging --- physical performance --- LHON --- Siberian population --- ancient mutation --- specific genetic background --- apoptosis --- human amniotic membrane --- mitochondrial cell death --- BAX --- BCL-2 --- tensile strength --- mitochondrial gene expression --- mtDNA transcription --- mtRNA --- post-transcriptional mtRNA processing --- dsRNA --- innate immunity --- interferon response --- amino acid neurotransmitter --- cerebellar amino acid metabolism --- hypoxia --- 2-oxoglutarate dehydrogenase --- tricarboxylic acid cycle --- heart --- cytoskeletal proteins --- mitochondrial interactions --- plectin --- tubulin beta --- signaling --- GW9662 --- ischemia reperfusion injury --- Langendorff --- myocardial --- pioglitazone --- redox state --- rosiglitazone --- TZD --- uncoupling --- ADP/ATP carrier --- KmADP --- dextran --- morphology --- cardiomyocytes --- telomere length --- telomerase activity --- development --- regeneration --- intranuclear mitochondria --- healthy cells --- electron and confocal microscopy --- signaling pathways --- ion homeostasis --- human diseases
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