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Application pharmacogénomique des microarrays : le connectivity map

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Microarrays emerges more and more to be an inevitable tool for molecular biology research. Indeed, the technological progresses of these few years make possible cells whole genome studies in a single experiment. It explains why genes-expression profiling studies are more frequently used in medical research as well as in the clinical reality.
In 2006, some researchers form the Massachusset Institute of Technology described a new microarray application : the Connectivity Map. It consists in a collection of gene-expression profiles that allows to connect biological process, diseases and small molecules.
This innovating microarray application held our mind. It’s why we decided to learn more about the fonctionnality and the uses of this tool. So we used the data from some UCL researchers to improve the Connectivity Map Les microarrays s’imposent de plus en plus comme un outil incontournable pour la recherche en biologie moléculaire. En effet, avec les progrès technologiques de ces dernières années, il est désormais possible d’étudier l’expression de l’ensemble des gènes d’une lignée cellulaire en une seule manipulation. C’est ainsi que les études de profils d’expression génomique prennent une place grandissante dans la recherche médicale ainsi que dans la réalité clinique.
En 2006, des chercheurs du Massachusset Institute of Technology ont décrit une nouvelle application de ces microarrays : le Connectivity Map. Il s’agit d’une banque de données permettant de relier des états biologiques et des molécules pharmacologiques, en se basant sur les profils d’expression génomique.
Cette utilisation innovante des microarrays a retenu toute notre attention. C’est pourquoi nous avons essayé de comprendre le principe de fonctionnement et les intérêts de cet outil. Des expériences effectuées par des chercheurs de l’UCL nous ont servi de base afin de tester ce Connectivity Map

Microarray analysis
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ISBN: 0471414433 Year: 2003 Publisher: New York, NY : John Wiley,

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Microarrays, immune responses, and vaccines
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ISBN: 1573314471 Year: 2002 Publisher: New York (N.Y.) : New York academy of sciences,

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Guide to analysis of DNA microarray data
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ISBN: 0471656046 Year: 2004 Publisher: Hoboken, N.J. : Wiley-Liss,

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A beginner's guide to microarrays
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ISBN: 9781402074721 1402074727 Year: 2003 Publisher: Boston (Mass.): Kluwer Academic Publishers,

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Dissertation
High dimensional data analysis for new insight in ovarian cancer phenotypes.
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ISBN: 9789036741200 Year: 2010 Publisher: Enschede Ipskamp

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Microarray bioinformatics
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ISBN: 052152587X 9780521525879 0521819822 9780521819824 9780511615535 Year: 2003 Publisher: Cambridge: Cambridge university press,

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DNA microarrays have revolutionized molecular biology and are becoming a standard tool in the field. Dov Stekel's book is a comprehensive guide to the mathematics, statistics and computing required to use microarrays successfully. Unlike traditional molecular biology, the successful use of DNA microarrays requires the application of statistics and computing to design the arrays and experiments, and to analyze and manage the data. This book is written for researchers, clinicians and laboratory managers.

Methods of microarray data analysis IV
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ISBN: 1280427507 9786610427505 0387230777 0387230742 1489987843 9781280427503 9780387230771 Year: 2005 Publisher: New York : Springer,

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As studies using microarray technology have evolved, so have the data analysis methods used to analyze these experiments. The CAMDA conference plays a role in this evolving field by providing a forum in which investors can analyze the same data sets using different methods. METHODS OF MICROARRAY DATA ANALYSIS IV is the fourth book in this series, and focuses on the important issue of associating array data with a survival endpoint. Previous books in this series focused on classification (Volume I), pattern recognition (Volume II), and quality control issues (Volume III). In this volume, four lung cancer data sets are the focus of analysis. We highlight three tutorial papers, including one to assist with a basic understanding of lung cancer, a review of survival analysis in the gene expression literature, and a paper on replication. In addition, 14 papers presented at the conference are included. This book is an excellent reference for academic and industrial researchers who want to keep abreast of the state-of-the-art of microarray data analysis. Jennifer Shoemaker is a faculty member in the Department of Biostatistics and Bioinformatics and the Director of the Bioinformatics Unit for the Cancer and Leukemia Group B Statistical Center, Duke University Medical Center. Simon Lin is a faculty member in the Department of Biostatistics and Bioinformatics and the Manager of the Duke Bioinformatics Shared Resource, Duke University Medical Center.

Statistics for microarrays: design, analysis and inference
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ISBN: 0470849932 9780470849934 Year: 2004 Publisher: Chichester Wiley

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Interest in microarrays has increased considerably in the last ten years. This increase in the use of microarray technology has led to the need for good standards of microarray experimental notation, data representation, and the introduction of standard experimental controls, as well as standard data normalization and analysis techniques. This book is the first book that presents a coherent and systematic overview of statistical methods in all stages in the process of analysing microarray data, from getting good data to obtaining meaningful results. Primarily aimed at statistically-minded biologists, bioinformaticians, biostatisticians, and computer scientists working with microarray data, the book is also suitable for postgraduate students of bioinformatics.

Analyzing microarray gene expression data
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ISBN: 0471226165 9780471226161 Year: 2004 Publisher: Hoboken: Wiley,

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