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This comprehensive exploration delves into the pivotal role of bacteria in soil health, elucidating their mechanisms in organic matter decomposition, metal facilitation, bioremediation of stubborn materials, and nutrient cycling essential for soil fertilization, plant health and conditioning. In an agricultural ecosystem, soil nutrients are the backbone, sourced either externally through fertilizers or internally by the action of soil bacteria. Understanding the intricate concert of soil bacteria within the ecological framework offers three significant advantages: revitalizing soil health and quality (soil reclamation), enhancing soil nutrient availability (biofertilization), and amplifying crop yields in an environmentally sustainable manner (sustainable agriculture). This book caters to a diverse audience including educators, researchers, technocrats, policymakers, agricultural foundations, non-governmental organizations, and particularly research students. It also serves as supplementary material for undergraduate and graduate students across various disciplines such as agriculture, microbiology, biotechnology, forestry, ecology, soil science, and environmental sciences. Additionally, it provides invaluable insights for both national and international agricultural scientists and soil ecologists, enriching their understanding of soil ecosystems and agricultural sustainability.

Botany. --- Microbial populations. --- Physiology. --- Plant Science. --- Microbial Communities. --- Soil microbiology.

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Recent developments in various “OMICs” fields have revolutionized our understanding of the vast diversity and ubiquity of microbes in the biosphere. However, most of the current paradigms of microbial cell biology, and our view of how microbes live and what they are capable of, are derived from in vitro experiments on isolated strains. Even the co-culturing of mixed species to interrogate community behavior is relatively new. But the majority of microorganisms lives in complex communities in natural environments, under varying conditions, and often cannot be cultivated. Unless we obtain a detailed understanding of the near-native 3D ultrastructure of individual community members, the 3D spatial community organization, their metabolic interdependences, coordinated gene expression and the spatial organization of their macromolecular machines inventories as well as their communication strategies, we won’t be able to truly understand microbial community life. How spatial and also temporal organization in cell–cell interactions are achieved remains largely elusive. For example, a key question in microbial ecology is what mechanisms microbes employ to respond when faced with prey, competitors or predators, and changes in external factors. Specifically, to what degree do bacterial cells in biofilms act individually or with coordinated responses? What are the spatial extent and coherence of coordinated responses? In addition, networks linking organisms across a dynamic range of physical constraints and connections should provide the basis for linked evolutionary changes under pressure from a changing environment. Therefore, we need to investigate microbial responses to altered or adverse environmental conditions (including phages, predators, and competitors) and their macromolecular, metabolic responses according to their spatial organization. We envision a diverse set of tools, including optical, spectroscopical, chemical and ultrastructural imaging techniques that will be utilized to address questions regarding e.g. intra- and inter-organism interactions linked to ultrastructure, and correlated adaptive responses in gene expression, physiological and metabolic states as a consequence of the alterations of their environment. Clearly strategies for co-evolution and in general the display of adaptive strategies of a microbial network as a response to the altered environment are of high interest. While a special focus will be placed on terrestrial sole-species or mixed biofilms, we are also interested in aquatic systems, biofilms in general and microbes living in symbiosis. In this Research Topic, we wish to summarize and review results investigating interactions and possibly networks between microbes of the same or different species, their co-occurrence, as well as spatiotemporal patterns of distribution. Our goal is to include a broad spectrum of experimental and theoretical contributions, from research and review articles to hypothesis and theory, aiming at understanding microbial interactions at a systems level.

Microbiology. --- uncultivated biofilms --- Archaea --- inter-species interactions --- microbial communities --- microbial networks

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Recent developments in various “OMICs” fields have revolutionized our understanding of the vast diversity and ubiquity of microbes in the biosphere. However, most of the current paradigms of microbial cell biology, and our view of how microbes live and what they are capable of, are derived from in vitro experiments on isolated strains. Even the co-culturing of mixed species to interrogate community behavior is relatively new. But the majority of microorganisms lives in complex communities in natural environments, under varying conditions, and often cannot be cultivated. Unless we obtain a detailed understanding of the near-native 3D ultrastructure of individual community members, the 3D spatial community organization, their metabolic interdependences, coordinated gene expression and the spatial organization of their macromolecular machines inventories as well as their communication strategies, we won’t be able to truly understand microbial community life. How spatial and also temporal organization in cell–cell interactions are achieved remains largely elusive. For example, a key question in microbial ecology is what mechanisms microbes employ to respond when faced with prey, competitors or predators, and changes in external factors. Specifically, to what degree do bacterial cells in biofilms act individually or with coordinated responses? What are the spatial extent and coherence of coordinated responses? In addition, networks linking organisms across a dynamic range of physical constraints and connections should provide the basis for linked evolutionary changes under pressure from a changing environment. Therefore, we need to investigate microbial responses to altered or adverse environmental conditions (including phages, predators, and competitors) and their macromolecular, metabolic responses according to their spatial organization. We envision a diverse set of tools, including optical, spectroscopical, chemical and ultrastructural imaging techniques that will be utilized to address questions regarding e.g. intra- and inter-organism interactions linked to ultrastructure, and correlated adaptive responses in gene expression, physiological and metabolic states as a consequence of the alterations of their environment. Clearly strategies for co-evolution and in general the display of adaptive strategies of a microbial network as a response to the altered environment are of high interest. While a special focus will be placed on terrestrial sole-species or mixed biofilms, we are also interested in aquatic systems, biofilms in general and microbes living in symbiosis. In this Research Topic, we wish to summarize and review results investigating interactions and possibly networks between microbes of the same or different species, their co-occurrence, as well as spatiotemporal patterns of distribution. Our goal is to include a broad spectrum of experimental and theoretical contributions, from research and review articles to hypothesis and theory, aiming at understanding microbial interactions at a systems level.

Microbiology. --- uncultivated biofilms --- Archaea --- inter-species interactions --- microbial communities --- microbial networks

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Biodegradation mediated by indigenous microbial communities is the ultimate fate of the majority of oil hydrocarbon that enters the marine environment. The aim of this Research Topic is to highlight recent advances in our knowledge of the pathways and controls of microbially-catalyzed hydrocarbon degradation in marine ecosystems, with emphasis on the response of microbial communities to the Deepwater Horizon oil spill in the Gulf of Mexico. In this Research Topic, we encouraged original research and reviews on the ecology of hydrocarbon-degrading bacteria, the rates and mechanisms of biodegradation, and the bioremediation of discharged oil under situ as well as near in situ conditions.

Biodegradation --- Metagenomics --- oil spill --- metatran --- bacterioplankton --- Bacteria --- Gulf of Mexico --- microbial communities --- hydrocarbon --- Deepwater Horizon

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This edited book covers the latest trends to improve soil health. It provides an easy-to-understand information to the readers. This book acts as a reference book for various agronomists and research scholars working in the field of agriculture. This edited book covers advanced technologies and practices carried out worldwide to improve soil health. In the present scenario, it is very important to save soil health and replenish it in a sustainable manner from various anthropogenic hazards. As soil is the source to almost all lives on earth and it is duty, the scientific community is developing ways to disseminate and communicate the most recent advancements to restore its health. Content of the book is designed in such a way that it provides a compressive information to the readers to restore the soil health that will ultimately help to improve the health of microbes, animals as well as plants that thrive in the soil and ultimately the quality of life of human being. This book helps research scholars and teachers working in agriculture, horticulture, and environmental management by utilizing advances in microbiology and biotechnology. It is of interest to undergraduate and graduate students, teachers, researchers, environmentalists, agriculture and horticulture scientists, capacity builders, policy makers and all other stakeholders. .

Microbial ecology. --- Microbial populations. --- Microbial genetics. --- Environmental Microbiology. --- Microbial Communities. --- Microbial Genetics.