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Book
Non-coding RNAs in Complex Diseases : A Bioinformatics Perspective
Authors: --- --- --- ---
ISBN: 9789811307195 9811307199 9811307180 Year: 2018 Publisher: Singapore : Springer Nature Singapore : Imprint: Springer,

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This book offers an in-depth and comprehensive review on current understanding of regulatory ncRNAs in complex diseases from a view of bioinformatics. It conveys state-of-the-art bioinformatics tools and methods for ncRNAs from computational detection, functional prediction, to their roles in diseases. Computational methods used to investigate uncharacterised ncRNAs in diseases are mainly summarized in seven aspects: DNA variation of ncRNAs in diseases, prioritization of disease-related ncRNAs, dysregulation epigenetic factors that regulate ncRNA misexpression (DNA methylation and histone-modification), complex crosstalk across ncRNAs, ncRNAs acted as competing regulators to mediate the expression of protein-coding genes, non-coding RNAs mediated risk pathways,and their contributions to drug target predictions. The generally used data resources of ncRNAs are also listed in the end. This book provides important information on the current progress in the fast-moving fields of bioinformatics for regulatory ncRNAs. It provides a timely and useful reference for computational biologists, specifically with RNA interests, and other related areas. Prof. Xia Li is a Professor and the Dean of College of Bioinformatics Science and Technology, Harbin Medical University, China. Dr. Yun Xiao, Dr. Juan Xu, Dr. Shangwei Ning and Dr. Yunpeng Zhang are from College of Bioinformatics Science and Technology, Harbin Medical University, China.


Digital
Non-coding RNAs in Complex Diseases : A Bioinformatics Perspective
Authors: --- --- --- ---
ISBN: 9789811307195 Year: 2018 Publisher: Singapore Springer Singapore, Imprint: Springer

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Abstract

This book offers an in-depth and comprehensive review on current understanding of regulatory ncRNAs in complex diseases from a view of bioinformatics. It conveys state-of-the-art bioinformatics tools and methods for ncRNAs from computational detection, functional prediction, to their roles in diseases. Computational methods used to investigate uncharacterised ncRNAs in diseases are mainly summarized in seven aspects: DNA variation of ncRNAs in diseases, prioritization of disease-related ncRNAs, dysregulation epigenetic factors that regulate ncRNA misexpression (DNA methylation and histone-modification), complex crosstalk across ncRNAs, ncRNAs acted as competing regulators to mediate the expression of protein-coding genes, non-coding RNAs mediated risk pathways,and their contributions to drug target predictions. The generally used data resources of ncRNAs are also listed in the end. This book provides important information on the current progress in the fast-moving fields of bioinformatics for regulatory ncRNAs. It provides a timely and useful reference for computational biologists, specifically with RNA interests, and other related areas. Prof. Xia Li is a Professor and the Dean of College of Bioinformatics Science and Technology, Harbin Medical University, China. Dr. Yun Xiao, Dr. Juan Xu, Dr. Shangwei Ning and Dr. Yunpeng Zhang are from College of Bioinformatics Science and Technology, Harbin Medical University, China.


Dissertation
Land commodification without dispossession? : The political economy of the market-oriented experiment of Rural Collective Commercial Construction Land in China

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Rather than seeing land commodification as a taken-for-granted term to explain urban and rural changes, this thesis offers a nuanced conceptual and empirical explanation of the process of land commodification and the interaction among involved actors. Based on data collected from the fieldwork in Pidu District of Chengdu City, China, between 2017-2021, this thesis examines the socioeconomic dynamics and consequences of the market-oriented experiment of rural collective commercial construction land (RCCCL) in China, paying attention to the changes between urban and rural areas, central and local, state and collectives. First, I review the policies of construction land supply in China and link them to state politics. Second, from an actor perspective, I examine the land commodification in the RCCCL experiment as a process consisting of three stages steered by different actors. Third, I pay close attention to one of the most important actors, village collectives, to examine their different attitudes and performance in the RCCCL experiment. Fourth, I discuss the rural transformation caused by land commodification using a case study of land development for amenity migrants.The main argument of this thesis is that the RCCCL experiment in China is a land commodification process that opens up land markets in rural areas by state-controlled policy experimentation, and that dispossessory practices emerge in the commodification process. These findings contribute a nuanced understanding of land commodification and the dispossessory practices in China. Thus, this thesis not only advances the understanding of the transformation of rural China, but also might offer insights into other developing economies, where land commodification involves various dispossessory practices and variegated actors. This thesis offers two lessons for rural (re)development. First, the market approach in land transfer does not necessarily mean 'voluntariness' and 'equity' because it is usually associated with political, legal, and even coercive power. Second, whatever the institutions and governance practices for development, people-orientation should be put in the first place.

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Dissertation
The Right to Stay: Fighting Forced Evictions in Mukuru

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Over the last decades, the rate of urbanization in Sub-saharan Africa and other cities in the global South has been on an upward trajectory. However, the increase in urban population has not been accompanied by improvements in infrastructure and other services such as housing, putting immense pressure on urban areas. The lack of proper housing policies that guarantee accessibility and affordability of decent housing has led to the proliferation of slums and informal settlements. Due to the unclear tenure, these settlements have been spaces of contestation, tension, and conflict between various actors. The interaction between such factors is evident through constant evictions in informal settlements. Evictions render citizens homeless, violating their right to adequate housing and a range of other rights such as the right to life. Mukuru settlement is one of the largest informal settlements in Nairobi, Kenya’s capital. The settlement is adjacent to Nairobi’s industrial area and seven kilometers from the Central Business District (CBD). Due to its strategic location, Mukuru is home to around 300,000 people, most of whom work or are looking for employment opportunities in adjacent industries or the CBD. However, irregular land allocations have led to increased evictions and conflicts between residents and the private individuals claiming the land. In addition to conflicts arising from land tenure, residents here suffer from the “poverty penalty,” which is evident through the minimal provision of social and physical infrastructural services and the high price that residents have to pay to access these sub-optimal services. All these challenges represent a denial of the rights of the people living in Mukuru. In 2017, the settlement was declared a Special Planning Area (SPA). Under the declaration, the city government was required to prepare an integrated development that would be used as a blueprint to improve livelihoods and solve the eviction crisis. Therefore, this thesis is guided by the following question: How and to what extent does the declaration of the Mukuru SPA prevent forced evictions and guarantee the right to adequate housing? The study adopts the right to the city framework to answer this question. As various scholars have discussed, the openness of the right to the city can be open to misuse and misinterpretation. Using the framework requires a definition of what kind of right is being discussed, whose right it is and how the right is claimed. This study anchors the right to the city on a human rights approach, placing the Mukuru residents at the centre of the claim. Finally, the study was carried out using qualitative methods. Most of the data was gathered through secondary sources, with two Key expert interviews carried out to gain further understanding of the case. The Kenyan government has made considerable steps in enacting laws that govern evictions. Additionally, the declaration of the SPA represented the government’s response to the cry and demand of thousands of people living in Mukuru whose rights have been denied and violated over the years. The planning process was bottom-led and succeeded in providing the required solutions. However, as this study has uncovered, the plan's current implementation is impeding the potential that it holds.

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Dissertation
Civil Society for Workers in ICT Assembly Lines in the EU?: The case of Fair ICT initiatives

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European Union (EU) member states decided to trigger economic growth by attracting foreign direct investment in their countries and by making the European labor market more flexible. This flexibilization of labor in terms of working time, work-contracts and wages comes with the price of difficult working conditions in Information and Communication Technology (ICT) devices assembly plants (such as smartphones, tablets, laptops). The EU has put in place weak protection tools such as European Works Councils and Corporate Social Responsibility. These tools are voluntary and rely on implementation in the private sphere, pushing the state further away from its role of service provider. In addition, as trade unions in Central and Eastern European (CEE) countries lack power over their employer in ICT industry, NGOs have taken a step forward. ‘Fair ICT’ initiatives seem to have appeared to fill in the void left by the states, the EU and trade unions. Therefore, this paper aimed to see how civil society initiatives are translated into protection of ICT assembly factory workers in the European Union. The post-Marxist framework, which sees civil society movements as the new bearers of long-term and gradual societal challenges, appeared as the right vision of the world to understand the work of ‘fair ICT’ initiatives. Ten semi-structured interviews with nine activists from different civil society organizations (TCO, CATAPA, ICLEI, SOMO, Südwind, Electronics Watch, TSA-FFE, University of Edinburgh), as well as anonymous information from two CEE countries ICT workers, and additional documentations provided by interviewees (or available on their websites) were analyzed through this post-Marxist perspective. Findings show that the ‘fair ICT’ initiatives make use of several ‘common’ strategies for NGOs: lobbying, networking, engaging with industry and creating knowledge (through research and awareness raising campaigns). These strategies have also been screened in terms of effectiveness. Lobbying appears as the least effective strategy and the effectiveness of networking is debated as well. Research and awareness raising campaigns do not focus enough on the situation of ICT assembly workers in the EU to trigger real change for them. Industry engagement also faces critics, especially social audits associated with certification mechanisms which could tend to profit industry more than workers. Finally, findings show that ‘fair ICT’ initiatives have a socially innovative strategy. They could, however, contribute more to the empowerment of ICT assembly workers and to a change in social relations.

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Dissertation
Transit-induced Gentrification in Bangkok: The Case Studies of Onnut and Samrong

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Bangkok, the capital city of Thailand has seen rapid economic development and urbanization in the past decades, leading to a multitude of urban problems including environmental degradation and traffic jams. To alleviate these issues, the first-ever mass transit system; the Bangkok Mass Transit System or the BTS was thus implemented in the city in 1999 and has since expanded its service geographically into the adjacent provinces. Although mass transit systems like the BTS have the potential to contribute to the city’s sustainability by reducing greenhouse gas emissions, improving citizens’ well-being, and fostering economic growth, not everyone in the city profits from such benefits. These benefits come with the cost of neighborhood gentrification and the subsequent displacement of low-income people as lands are (re)developed to take advantage of the proximity to the mass transit stations. As a result, a proliferation of new condominium buildings takes place along the BTS lines and diminishes affordable housing stock in the gentrified neighborhoods. This particular type of gentrification can be called ‘transit-induced gentrification’. This is relevant to sustainable development as decent and affordable housing is a human right and one of the core elements of sustainability. Moving forward to sustainability in urban development will not only need to remove social inequalities and ensure access to decent and affordable housing for all (UNDP, n.d.) but also inclusive cities in which everyone can benefit from urbanization. Accordingly, focusing on the BTS, the thesis studies transit-induced gentrification in Bangkok and its impacts on different groups of land users. The case study approach within the qualitative method is used to study the phenomenon in two case study areas in Bangkok; Onnut and Samrong. The development of this thesis is guided by two main research questions; 1) To what extent does the (introduction of) mass transit lead to gentrification in the case study areas? and 2) What are the outcomes/impacts of transit-induced gentrification on different groups of land users in the case study areas? In the attempt to answer the research questions, the thesis adopts the theories of the rent gap, the consumption explanations of gentrification, and gentrification-induced displacement. Interviews with two groups of land users; local land users and condo residents, are also crucial to the study. The findings suggest that the BTS may have a direct impact on the increase in land values in the proximity to the stations. Because the BTS enhances the accessibility of the neighborhood, the neighborhood becomes more spatially attractive for both middle-class condo residents and real estate developers who seek profitable returns. Data from the interviews show that the two groups of land users are impacted differently by transit-induced gentrification, with more negative for the local land users and more positive for the condo residents. The findings have many implications for sustainable development. Although many positive impacts of the BTS and transit-induced gentrification are found, its adverse impacts, especially on the low-income population, must be recognized and addressed. Policy-oriented strategies will be required to manage transit-induced gentrification and alleviate its negative impacts.

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Dissertation
Digitising reforestation: Ecosia search engine as a platform for sustainability

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A sustainability transition invites multi-stakeholder action, frequently translated into turning the planet ‘green’ with trees. Digital technologies facilitate the tree planting frenzy, which, however, remains little studied. This research explored the intersection between digital platforms and sustainability by utilising Ecosia, a Berlin-based search engine, as a case study. It addressed the following question: ‘How do individual and institutional users interact with Ecosia’s search engine that is designed to promote tree planting, and to what extent do they perceive it as an agent of change in their sustainability transition?’. This question deconstructed platform elements, situated Ecosia within capitalism, and interpreted it as a sustainability tool by zooming in on the experiences of a Belgian university. This work used a transdisciplinary lens, drawing from media studies, political economy, platform, and science and technology studies. Theoretical and epistemological underpinnings included the actor-network theory and platform capitalism, while green growth and reforestation literature further informed this research. Methodologically, this thesis employed the walkthrough method as developed by Light et al. (2018), merging autoethnography, interviews, and secondary resources. This thesis drew attention to the links between Ecosia and the platform ecosystem. Essentially, interpretations of Ecosia were inseparable from platform theory, power asymmetries, and interdependencies. The findings pointed to Ecosia’s reliance on technology giants for infrastructural services. Yet, Ecosia’s differentiation lies in a value-driven approach founded on sustainability, integrity, and transparency. Ecosia manifests these in social (e.g., steward-ownership structure, privacy policy) and technological (e.g., data policy, visual interface cues) elements that constitute Ecosia. Another major differentiator is its treatment of data: Ecosia abstains from data commodification and monetisation by resisting the sale of data to third parties. Ecosia’s expansion into novel sectors and institutional adoption intensify its tree-planting efforts. From a critical perspective, they increase its valuation and denote profit extraction pathways. Concretely, Ecosia differs from other platforms but shares commonalities in pursuing growth. In answering the research question, the results pointed to the dialectical relationship between human beings and technology. For users, Ecosia is a digital tool that contributes to sustainability by translating an everyday activity into tree planting. Institutional adoption facilitates local student activism and campaigning; hence technology steered environmental action. Interviewees perceived Ecosia’s approach as a step towards sustainability, yet not as a silver bullet. Alternatives, such as decarbonisation and the need to address consumerism, were equally important. Tree planting is a drop in the ocean, yet an increase in users could have a significant environmental impact. Interviewees drew no connections to the Eurocentric roots of tree planting and the ecological importance of treeless ecosystems. The habituation of online search limited critical and ethical reflections on tree idealisations, and reductionist and quantitative approaches to nature. Future research could explore cross-institutional adoption, the spatial dimension of Ecosia’s climate investments, and on-the-ground tree planting beyond the virtual world.

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Dissertation
Heritage of Shanghai’s Lilong Houses Since Open Door Policy

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In recent years, Shanghai's urban constructions have developed rapidly, reshaping the city's urban structure. While skyscrapers top the urban skyline, traditional buildings such as lilong houses, are still significant to Shanghai’s urban scenery. Shanghai lilong houses represent a unique style of historical architecture. As a result of urban development, a large number of old lane houses were demolished. Many researchers studied lilong houses from a historical and social perspective, focusing on the Open Door Policy’s influence on these houses. Little research has been done on the influence of the government and society on the heritage of lane-structured houses. Therefore, this thesis seeks to analyze how the heritage of lilong houses is constructed both politically and socially in Chinese newspapers. This thesis consists of two parts. The first part is the literature study, and the second part is the research. This study first introduces background information of lilong houses in three chapters. The first chapter introduces what lilong buildings are, the second explores different styles, and the third chapter explains the history of lane houses. The part of literature study reviews the various perspectives other researchers took to study alleyway neighborhoods. Most of the scholars studied these houses from the perspective of political economy. Other scholars studied dwelling neighborhoods by looking at the consequences of urban development. In contrast to the existing research, the second part of this thesis uses frame analysis to study news articles related to lilong houses from Chinese newspapers, such as Wenhui News and Wen Wei Po. Results from this study shows that the protection of the cultural heritage of lilong houses depends on the attitude of the Chinese government. After the mass demolition of lane-structured neighborhoods, the government started to attach more importance to the cultural heritage of these neighborhoods. Recently, the local government can be observed to put more focus on the protection of lane neighborhoods. However, economic development has a significant impact on the preservation of alleyway neighborhoods. This thesis only analyzes news articles from two Chinese newspapers. Therefore, it only includes some public statements on the heritage of lilong houses. For more broad and in-depth research in the future, it would be interesting for researchers to study lilong neighborhoods from the perspective of protection law regarding the cultural heritage of these unique Shanghai dwelling houses.

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Dissertation
Port expansion, resistance, and contesting narratives

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The subject for this thesis was discovered quite late. It was a happy discovery as this is a unique social conflict in Belgium due to its length and intractability. As a student of sustainable development, it was especially interesting to uncover such a conflict so close to home. In Doel, the importance of growth and economics is placed directly opposite of the lives and experiences of the locals. Doel is a small village on the left bank of the river Scheldt just downriver from Antwerp. The village is located between the port of Antwerp to the South and the nuclear power plant of Doel to the north. Today, only 15-20 people live there. The majority of inhabitants were “consensually” expropriated by the government and financially compensated for their troubles to accommodate the expansion of the nearby port. Doel is not a success story for the port as there has been a protracted resistance in Doel since the expansionist rhetoric started in 1964. The most effective resistance was carried out in the courts of Belgium with the Council of State, the highest administrative court in Belgium, supporting the existence of Doel through its decisions. Thanks to those decisions a shift has happened in the conflict and today a process of consensual dialog is ongoing and marks an important tipping point in the conflict. I conducted 8 in-depth interviews in Dutch to uncover what had happened and what could be done about it in the future. The goal was to understand the conflict in Doel by uncovering intersecting conflicts and tensions to allow suggestions to be made for addressing similar conflicts. It quickly became quite clear that there was a dominant bloc in Doel consisting of the Flemish government, the port, and their allies. Their power has been challenged by a group of actors mainly consisting of farmers and activist committees on the other side. This powerful coalition of actors was focused on values such as economic growth and physical expansion while the resistance focused on another set of values closely linked to place identity and the value of nature and heritage. Resistance is often ambiguous, unclear, and romanticized. Because of this, there are many possible ways that it could cause friction within and outside of the resisting groups. These frictions were analyzed and seven contesting narratives were uncovered: the varying interpretations of expropriations leading to diverging interpretations of the conflict, the different attitudes actors had towards nature causing nature to be maltreated and used as a political instrument, the excessive focus on the economic side of the story ignoring other values linked to nature and heritage, the disempowerment of the local government by the higher governmental levels which relegated the local government to a passive and reactive role, the more social approach of the nuclear power plant compared to the confrontational approach of the port, the diverging future expectations of actors concerning the growth of the port and the village, and the differences between countries. In conclusion, these narratives served as the basis for several suggestions to enable similar conflicts to happen differently.

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Dissertation
Alternative shopping to deal with plastic packaging waste: a socially innovative practice - The case of the zero-waste cooperative network Ohne-coop

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While plastic is known for being embedded and infiltrated virtually in every aspect of our social life, food packaging in particularly, has been rapidly normalized in food markets like in the food retail industry -using mainly single-use plastics-. The waste produced from it has triggered a plastic waste pandemic with great damage generated to the environment, the society and the economy. However, at the same time alternatives modes of sustainable consumption have emerged as an option to address this issue. A new form that has drawn attention is packaging-free shopping promoted through zero-waste stores. This socially innovative sustainable consumption practice emerged within society, is a promising alternative strategy for reducing packaging waste. In fact, it is generally considered that social innovations have a high potential for establishing sustainable consumption practices. However, a main challenge in adopting this alternative mode of consumption is that it requires a great deal of commitment on the part of the consumer. In other words, the consumer needs to develop new skills and remove old habits in order to set up new ones. This type of socially innovative consumption practice is still under-researched. The way in which they emerge, how they engage consumers, how they expand and under which mechanisms they manage to establish themselves in the society, is still not well understood. Therefore, this thesis had the purpose to understand to what extent zero-waste shops can become a viable socially innovative solution to the packaging waste problem. By using the social practice theory and the concept of social innovation I analysed a zero-waste shop and its cooperative network of zero-waste stores. The analysis revealed that these zero-waste stores still have many limitations in providing a viable solution to the plastic waste problem. Despite the extraordinary situation in which we find ourselves (COVID-19), where conducting research has been challenging. This thesis aims to contribute to the limited field of alternative modes of consumption. However, it is agreed that further research of packaging-free shopping is necessary, in order to assess its fully potential.

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