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Genetic engineering: : principles and methods
Authors: ---
ISBN: 0306401541 0306404478 0306407299 030641113X 0306413825 0306417103 9780306466458 0306466457 9780306475726 9780387258553 0387258558 9780387258560 9780387338408 0387338403 9780387345048 9786610200603 128020060X 0306475723 148997363X 9786610608317 1280608315 0387258566 9786610817047 1280817046 0387345043 1468447955 1468447939 1461570743 1461570727 1461570778 1461570751 1461570808 1461570786 1468445588 1468445561 9780306404474 9780306401541 9780306417108 9780306413827 9780306407291 9780306411137 9781280200601 Year: 1980 Publisher: New York (N.Y.): Plenum,

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Abstract

Over the past decade, our laboratory and others have been concerned with molecular archaeological studies aimed at revealing the origins and evolutionary histories of permeases (1). These studies have revealed that several different families, defined on the basis of sequence similarities, arose independently of each other, at different times in evolutionary history, following different routes. When complete microbial genomes first became available for analysis, we adapted p- existing software and designed new programs that allowed us quickly to identify probable transmembrane proteins, estimate their topologies and determine the likelihood that they function in transport (2). This work allowed us to expand previously-recognized families and to identify dozens of new families. All of this work then led us to attempt to design a rational but comprehensive classification system that would be applicable to the complete complement of transport systems found in all living organisms (3). The classification system that we have devised is based primarily on mode of transport and energy coupling mechanism, secondarily on molecular phylogeny, and lastly on the substrate specificities of the individual permeases (4).

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