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Genomes, browsers, and databases
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ISBN: 9780511754838 9780521884433 9780521711326 9780511415289 0511415281 9780511410666 0511410662 0511414609 9780511414602 0521711320 0521884438 0511754833 1107186242 128175126X 9786611751265 0511412991 0511412061 0511413912 Year: 2008 Publisher: Cambridge [UK] New York Cambridge University Press

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Abstract

The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult and time-consuming. This book provides an overview of the key tools currently available for large-scale comparisons of gene sequences and annotations, focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI). Written specifically for biology and bioinformatics students and researchers, it aims to give an appreciation of the methods by which the browsers and their databases are constructed, enabling readers to determine which tool is the most appropriate for their requirements. Each chapter contains a summary and exercises to aid understanding and promote effective use of these important tools.

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