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2017 (6)

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Dissertation
Fluorescence microscopy tools for in situ catalyst characterization
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Year: 2017 Publisher: Leuven KU Leuven. Faculty of Bioscience Engineering

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The goal of this PhD thesis is to apply fluorescence microscopy to investigate the interplay between local catalytic performance and catalyst porosity and to derive structure-activity and selectivity relationships for heterogeneous catalysts at the level of individual catalytic turnovers. To achieve this goal, I employed both diffraction-limited and super-resolution fluorescence microscopy with support from other techniques.A first objective was to study the effects of dealumination on the distribution of acid sites inside individual mordenite crystals and the impact hereof on the catalytic activity. Using super-resolution fluorescence microscopy, Raman microspectroscopy, and focused-ion-beam-assisted scanning electron microscopy I identified significant variations in catalytic properties inside individual dealuminated mordenites as well as strong variations between individual catalyst crystals. The origin of this suboptimal catalytic performance could be linked to variabilities that exist during commercial, large-scale dealumination.Secondly I studied the effect of solvents on the catalytic performance of acid H-ZSM-5. Using fluorescence microscopy with the acid-catalyzed furfuryl alcohol oligomerization reaction I discovered that the reaction preferentially occurs in a subset of the ZSM-5 pores. Using solvents of different polarity this pore selectivity could be altered. This result can be used to selectively perform catalytic reactions in either of the micropore subsystems.Later, this fluorescence based approach was extended to study the catalytic activity of metal-organic frameworks. For ZIF-8 I could prove that the reactivity is limited to the outer surface and bulk crystal defects. This inefficient use of the MOF material can be abated by the introduction of larger mesopores. In this project, I used oleic acid etching to increase the molecular penetration of the whole crystal volume.In conclusion, in this thesis I have applied fluorescence microscopy to resolve the structure-activity relationships in zeolites and metal-organic frameworks, and suggested strategies to optimize the catalytic activity. The results and the wealth of inferences therefrom demonstrate how fluorescence microscopy can enrich catalysis research as a characterization method. Such studies can be used to advance the field of catalyst design and development.

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Dissertation
Combined super-resolution fluorescence and scanning electron microscopy for catalysis research
Authors: --- ---
Year: 2017 Publisher: Leuven KU Leuven

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The rational improvement of solid catalysts requires a thorough understanding of the structure-activity relationship down to the smallest possible length scales. Recently developed approaches that correlate fluorescence microscopy (FM) and scanning electron microscopy (SEM) allow such insights by direct linking of nanoscale catalytic activity maps, as recorded using fluorescence, to the local structural context. The goal of this PhD was to investigate structure-activity relationships at the nanoscale, by developing an integrated light and electron microscope (ILEM) that combines the power of single molecule sensitive FM to resolve reactivity at the nanoscale with a high-end SEM. Initially, the ILEM was applied to visualize silver nanoparticle photodeposition from an aqueous silver(I) solution on individual ZnO crystals, in real time. This was enabled by the ability to simultaneously perform local UV irradiation using the integrated light microscope and SEM imaging at the same region of interest (ROI) while the sample was contained inside a specialized liquid cell. This research revealed that silver nanoparticle formation predominantly occurs at crystal edges. However, the contribution of the electron beam during silver nanoparticle deposition was found to be non-negligible. Follow-up research was performed by applying the ILEM in a correlative fashion; i.e., by performing structural imaging before and after, and not during, UV induced silver photodeposition. As such, the facet dependent photocatalytic reactivity could be explored at the single particle level and, at the sub-particle level, variations were related to crystallographic structural features and defects. The first correlative super-resolution fluorescence and electron microscopic investigation of zeolite catalysts was made possible after resolving several technical challenges encountered during the ZnO research and by further optimizing the fluorescence microscope to enable the detection of individual catalytic fluorogenic conversions. This improved setup made it possible to directly observe the effect of intercrystalline intergrowths on the overall catalytic performance of acid mordenite zeolites. By determining the orientation of the individual reaction products compared to the underlying zeolitic framework, it was found that shape-selectivity was maintained at the defect-rich intergrowth boundary. Hence, the intergrowth was identified as a void space that facilitates mass transport into these pores. Acid leaching did not dramatically change this, as activity increased on previously active regions while the molecular orientation was maintained. A second correlative zeolite structure-activity investigation targeted individual ZSM-22 catalyst particles. The typical needle-shaped morphology of these particles results from a lateral fusion of elementary nanorods and indirect experimentation already suggested that during this lateral fusion, external, catalytically inactive, aluminum is converted into catalytically active internal aluminum. This was confirmed by the visualization of catalyst activity and shape-selectivity at the sub-particle level on the ILEM. In summary, over the course of this PhD, a performant ILEM was developed that combined super-resolution fluorescence microscopy based on the localization of individual fluorescent molecules with high-end field emission SEM. Also the necessary experimental routines and software tools were developed, enabling the determination of the structure-activity relationship of heterogeneous catalysts at the nanoscale. This powerful research tool allows a direct correlation of catalyst structure and activity beyond the single particle level. It is anticipated that the further application and development of this ILEM will ultimately lead to a more rationalized catalyst optimization.

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Dissertation
Synthese van cerium-gebaseerde MOF's voor redoxkatalyse

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Metaal-organische roosters (MOF’s) zijn door hun hoge porositeit en grote variabiliteit aan typologieën potentieel toepasbaar voor de opslag van gassen, gaszuivering en -scheiding en katalyse. In deze thesis werd gefocust op Ce(IV)-MOF’s omwille van hun redoxkatalytische eigenschappen. Deze laatste werden reeds gerapporteerd voor de aerobe benzylalcoholoxidatie met Ce/TEMPO als katalysatorsysteem. Hiervoor werd een reactiemechanisme voorgesteld waarin Ce een redoxcyclus doorloopt maar hier werd geen experimenteel bewijs voor geleverd. Deze stap is echter cruciaal om het redoxgedrag van Ce(IV)-MOF’s te extrapoleren naar andere reacties. In deze thesis werden eerst nieuwe Ce(IV)-MOF’s gesynthetiseerd waarvan de Zr-analogen reeds gekend zijn. De synthese gebeurde op basis van de precursor approach, waarbij de synthese van de Ce-clusters ex-situ plaatsvindt in tegenstelling tot de conventionele synthesemethode. Hierdoor worden omstandigheden vermeden waarin het Ce(IV)-zout gereduceerd wordt door de reactieve linkers. Gebruik makend van deze precursor approach werden acht nieuwe Ce-analogen van gekende Zr-MOF’s gesynthetiseerd: Ce-UiO-Muc, -BeFDC, -BDC-NH2, -SBDC, Ce-NU-1000, Ce-CAU-24-Pyr, Ce-MOF-525 en -545. Deze laatste werd als meest beloftevol materiaal gezien omdat het als enige zijn poriestructuur gedeeltelijk behield na activatie onder vacuüm (BET = 713 m2/g). Het vertoonde echter een lage solventstabiliteit waardoor het niet geschikt is als heterogene katalysator. Er werd daarom geopteerd om de redoxkatalytische experimenten op reeds gekende Ce(IV)-MOF’s uit te voeren. Ce-MOF-808 vertoont een hogere katalytische activiteit dan Ce-UiO-66 bij de TEMPO-gemedieerde aerobe oxidatie van benzylalcohol. Dit wordt zowel toegeschreven aan zijn grotere poriën als aan de lagere connectiviteit van zijn Ce-clusters, waardoor er meer katalytische actieve sites beschikbaar zijn. Dit laatste kan echter nog sterk verbeterd worden omdat Ce-MOF-808 na activatie nog steeds formaatmoleculen bevatte. Uit kinetische experimenten werd bepaald dat de aerobe benzylalcoholoxidatie volgens een pseudo-eerste-orde verloopt waarbij de snelheidsconstante stijgt met de concentratie TEMPO en de hoeveelheid katalysator. Dit duidt aan dat de snelheid van de globale reactie bepaald wordt door de concentratie van meerdere componenten in de katalytische cyclus. XANES-experimenten toonden aan dat minstens 1,4 Ce-ionen per cluster tijdens de reactie gereduceerd kunnen worden, wat de deur opent naar niet-gemedieerde twee-elektronoxidaties.

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Dissertation
Fotokatalytische oxidatie van koolstofdeeltjes

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In deze masterproef werd aangetoond dat verschillende koolstofsoorten, gaande van zuivere grafietdeeltjes tot roetachtige deeltjes, geoxideerd konden worden in relatief milde reactiecondities door de werking van een chemische stof die actief wordt onder ultraviolet licht. Bovendien werd dit fotokatalytische mechanisme versterkt door een oxiderend gasmengsel bestaande uit reactieve stikstofoxiden, die de atmosfeer sterk vervuilen. Daardoor werden deze schadelijke stikstofoxiden omgezet naar het ongevaarlijke stikstofgas. Zonder de aanwezigheid van de actieve chemische stof, bekend als de fotokatalysator, was de koolstofoxidatie echter niet mogelijk, tenzij in veel hardere reactieomstandigheden. Toepassingen van de foto-oxidatie van roetachtige koolstof zwart deeltjes in de aanwezigheid van stikstofoxiden worden voornamelijk gevonden in systemen voor luchtzuivering. Zowel de kleine, roetachtige fijnstofdeeltjes als de schadelijke stikstofoxiden, die beiden de uitstoot van dieselmotoren zeer vervuilend maken, werden weggereageerd door de wisselwerking tussen de oxidatie- en reductiereactie. Grafietoxidatie wordt heel vaak uitgevoerd omdat grafietoxide, grafeenoxide en grafeen dat gemaakt wordt via de geoxideerde tussenproducten veelbelovend zijn voor tal van nieuwe toepassingen door hun uitzonderlijke fysische en chemische eigenschappen. Enkele actuele toepassingen zijn fietsbanden (door Vittoria), buigbare schermen (door Samsung) en grafeenoxide gebaseerde katalysatoren voor organische reacties. Het oxidatieproces verloopt tegenwoordig nog steeds via een niet-duurzame, gevaarlijke vloeistoffase oxidatiemethode. De fotokatalytische grafietoxidatie uit dit thesisonderzoek bood echter een uitstekend alternatief voor deze klassieke oxidatiemethode. Het bleek een nieuwe oxidatiemethode te zijn die milieuvriendelijker en veel beter te controleren was. Grafiet, dat bestaat uit zuiver koolstof, is chemisch zeer stabiel en dus helemaal niet reactief. Dankzij de ontwikkelde groene oxidatiemethode werd zuurstof gebonden aan de verschillende grafietvlakken, waardoor het product verder benut zou kunnen worden. Het fotokatalytisch geoxideerd grafietproduct werd gekenmerkt door randen die veel sterker geoxideerd waren dan de grote, gladde buitenoppervlakken. Deze plaatsafhankelijke oxidatie werd in verband gebracht met de structuurdefecten van grafiet, die reactiever zijn dan gewoon grafitisch koolstof. De gecontroleerde aard van de foto-oxidatie werd ook weerspiegeld in de relatief hoge structurele orde van de geoxideerde grafietdeeltjes.

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Dissertation
Label-free bio-imaging and quantification of polluting carbonaceous particles to assess their toxicology

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In 2015, it is estimated that worldwide 4.2 million people died prematurely because of the consequences of air pollution. Moreover, ambient pollution has been identified as the leading cause of the global disease burden. The core of atmospheric pollutant particles is represented by combustion-derived particles (CDPs), such as carbon black (CB) and black carbon (BC), which are produced during incomplete combustion processes of, for example, diesel fuel. Various studies indisputably demonstrated that exposure to CDPs is associated with a wide range of adverse health effects including, among others, cardiovascular and pulmonary diseases as well as lung cancer. Recent investigations have even promulgated this type of particles to be more harmful to the human health than other subcomponents of particulate air pollution. Although great progress has been made in comprehending the interactions of CDPs with biological systems, improved methods to probe these particles in complex environments and to gain detailed information about their corresponding adverse impact, are still needed. Hence, this dissertation focused on the persisting demand of analytical techniques for the qualitative and quantitative determination of carbonaceous particles in biologically relevant samples. Consequently, two novel optical-based analytical methods were developed using white-light generation under femtosecond pulsed laser illumination and pump-probe imaging. Both techniques were evaluated in various complex biological environments, such as human lung fibroblasts and urine samples. These results clearly showed that both techniques have numerous advantages over existing technology as these are label-free, biocompatible and straightforward approaches that discriminate background signals from biological components and can be easily combined with various fluorochromes. Furthermore, it was shown that both techniques can be employed to measure black carbon particles in urine and that urinary loading can serve as an exposure matrix to CDP-based air pollution, reflecting the passage of black carbon particles from circulation into urine. Additionally, advances were made in the field of displacement microscopy by making the quantification of large cell-induced deformations possible and by studying these displacements in a label-free manner using second harmonic generation (SHG) from collagen fibrils instead of the traditionally used fiducial markers. In this dissertation, this advanced method has been employed to elucidate the toxicological effects of carbonaceous particles, which proved that those particles can inhibit lung fibroblast-mediated matrix remodeling via an oxidant-dependent mechanism. During the past four years, great advances have been made but we are not there yet. First of all, in light of our patent application, an automatized, prototype set-up needs to be built to make high-throughput screening of biological samples possible. Secondly, additional toxicological studies should be performed to answer crucial questions about particle internalization and co-localization inside cellular organelles and to confirm the proposed oxidant-dependent pathway. Thirdly, epidemiological studies should be set-up to closely study the effect of carbon-based materials on human health and golden standards based on optical microscopy should be re-evaluated. In summary, the two optical-based analytical techniques and advanced displacement microscopy method described in this dissertation pushed the boundaries of toxicological and epidemiological studies to the next level and opened doors to many new opportunities in both fundamental and applied research. We believe that eventually these contributions will result in an improved understanding of the specific toxicology effects of CDPs and direct associations of those particles with adverse health effects. It might even lead to novel or additional indicators for more precise air quality strategies and regulatory proposals.

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Dissertation
Watching blood vessel growth in 3D at the cellular level. Lightsheet imaging for real-time visualization of angiogenesis.

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The process of new blood vessel formation out of already existing vasculature called “angiogenesis” is a crucial process in the development of new tissue and organs, wound healing and a broad range of diseases. To the benefit of humankind, it is essential to fully understand angiogenesis. Research has already proven that the glycolysis is the metabolic pathway responsible for most of the ATP production in endothelial cells. For example, diseases like cancer, resulting in an excess of angiogenesis, can be treated by inhibiting this process. Therefore an inhibitor, 3PO, was determined, which inhibits the rate-limiting step of the glycolysis. During this thesis, a special, truly three-dimensional microscopy technique was established for investigating angiogenesis with high temporal resolution. The advantages of light sheet microscopy are: fast dynamic image acquisition, less photo bleaching and photo toxicity resulting in an excellent tool for time lapse microscopy. After gathering the data, algorithms of traction force microscopy were employed in order to determine the displacements of the beads compared to the reference bead position of the last time point. While imaging, Cytochalasin D (CytoD), an inhibitor of the actin cytoskeleton was used with the purpose to achieve a stress free state of the cells. Angiogenic sprouts have subsequently been examined involving cell culture, light sheet microscopy and algorithms of traction force microscopy. Samples were prepared where human umbilical vein endothelial cells were seeded on a collagen containing fluorescent beads. This gel contains a pro-angiogenic factor as well, which induces the formation of sprouts. Those sprouts were then imaged with a light sheet microscope. There is a strong indication that CytoD can be used to induce the relaxed state in light sheet displacement microscopy. Furthermore, the inhibitor 3PO is likely to indeed have an effect on the cells, due to a decrease in the dynamics of the bead displacements. In the next set of experiments, fast filopodia movement of the sprouts was observed using the advantage of a possible high time resolution with light sheet microscopy. A 20 or 25 μm z-stack was imaged every four seconds. Sprout- and filopodia formation were examined in different collagen concentrations. Especially the length of the sprouts seems to be influenced by the collagen concentration. The filopodia formation and attempts during imaging seemed to have a trend, but only 1 significant result was observed due to the limited number of imaged sprouts per sample.

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