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DNA polymerases are core tools for molecular biology including PCR, whole genome amplification, DNA sequencing and genotyping. Research has focused on discovery of novel DNA polymerases, characterization of DNA polymerase biochemistry and development of new replication assays. These studies have accelerated DNA polymerase engineering for biotechnology. For example, DNA polymerases have been engineered for increased speed and fidelity in PCR while lowering amplification sequence bias. Inhibitor resistant DNA polymerase variants enable PCR directly from tissue (i.e. blood). Design of DNA polymerases that efficiently incorporate modified nucleotide have been critical for development of next generation DNA sequencing, synthetic biology and other labeling and detection technologies. The Frontiers in Microbiology Research Topic on DNA polymerases in Biotechnology aims to capture current research on DNA polymerases and their use in emerging technologies.
Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- DNA polymerase evolution --- DNA polymerase fidelity --- molecular diagnostics --- DNA polymerase --- PCR inhibitors --- next generation sequencing --- PCR --- DNA sequencing
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"Next-generation DNA sequencing (NGS) technology has revolutionized biomedical research, making genome and RNA sequencing an affordable and frequently used tool for a wide variety of research applications including variant (mutation) discovery, gene expression, transcription factor analysis, metagenomics, and epigenetics. Bioinformatics methods to support DNA sequencing have become and remain a critical bottleneck for many researchers and organizations wishing to make use of NGS technology. Next-Generation DNA Sequencing Bioinformatics, Second Edition, provides thorough, plain language introduction to the necessary informatics methods and tools for analyzing NGS data as did the first edition, and provides detailed descriptions of algorithms, strengths and weaknesses of specific tools, pitfalls and alternative methods. Four new chapters in this edition cover: experimental design, sample preparation, and quality assessment of NGS data; Public databases for DNA Sequencing data; De novo transcript assembly; proteogenomics; and emerging sequencing technologies. The remaining chapters from the first edition have been updated with the latest information. This book also provides extensive reference to best-practice bioinformatics methods for NGS applications and tutorials for common workflows. The second edition of Next-Generation DNA Sequencing Bioinformatics addresses the informatics needs of students, laboratory scientists, and computing specialists who wish to take advantage of the explosion of research opportunities offered by new DNA sequencing technologies"-- "Next-generation DNA sequencing (NGS) technology has revolutionized biomedical research, making complete genome sequencing an affordable and frequently used tool for a wide variety of research applications. This book provides a thorough introduction to the necessary informatics methods and tools for operating NGS instruments and analyzing NGS data"--
medische informatica --- Human genetics --- DNA --- Molecular biology --- Human medicine --- medische genetica --- Nucleotide sequence --- Bioinformatics --- Nucleotide sequence. --- Bioinformatics. --- Sequence Analysis, DNA --- Computational Biology --- Analysis, DNA Sequence --- DNA Sequence Determination --- DNA Sequence Determinations --- DNA Sequencing --- Determination, DNA Sequence --- Determinations, DNA Sequence --- Sequence Determinations, DNA --- DNA Sequence Analysis --- Sequence Determination, DNA --- Analyses, DNA Sequence --- DNA Sequence Analyses --- Sequence Analyses, DNA --- Sequencing, DNA --- Genomics --- Molecular Sequence Annotation --- Bio-informatics --- Biological informatics --- Biology --- Information science --- Computational biology --- Systems biology --- Analysis, Nucleic acid sequence --- Analysis, Nucleotide sequence --- Base sequence (Nucleic acids) --- DNA sequence --- Nucleic acid sequence analysis --- Nucleotide sequence analysis --- RNA sequence --- Sequence, Nucleotide --- Nucleic acids --- Nucleotides --- Sequence alignment (Bioinformatics) --- methods --- Data processing --- Analysis
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This book proposes immunogenomics, or immunopharmacogenomics, as the next-generation big science to uncover the role that the immune system plays in the pathogenesis of many diseases, by summarizing the importance of the deep sequencing of T-cell and B-cell receptors. Immunogenomics/immunopharmacogenomics, a genetic characterization of the immune system made possible by next-generation sequencing (NGS), will be important for the further understanding of the pathogenesis of various disease conditions. Abnormal immune responses in the body lead to development of autoimmune diseases and food allergies. Rejection of recipient cells and tissues, as well as severe immune reactions to donor cells, is also the result of uncontrolled immune responses in the recipient body. There have been many reports indicating that activated immune responses caused by the interaction of drugs and HLA are present in drug-induced skin hypersensitivity and liver toxicity. The importance of the host immune responses has been recognized in cancer treatments, not only for immunotherapy but also for cytotoxic agents and molecular targeted drugs. Hence, characterization of the T-cell receptor and B-cell receptor repertoire by means of NGS deep sequencing will ultimately make possible the identification of the molecular mechanisms that underlie various diseases and drug responses. In addition, this approach may contribute to the identification of antigens associated with the onset or progression of autoimmune diseases as well as food allergies. Although the germline alterations and somatic mutations have been extensively analyzed, changes or alterations of the immune responses during the course of various disease conditions or during various treatments have not been analyzed. It is also clear that computational analyses to draw meaningful inferences of functional recognition receptors on the immune cells remain a huge challenge. .
Human immunogenetics --- Pharmacogenomics --- Pharmacogenetics --- Receptors, Antigen, T-Cell --- High-Throughput Nucleotide Sequencing --- Receptors, Antigen, B-Cell --- Immunotherapy --- Methods --- Immunogenetic Phenomena --- Receptors, Antigen --- Immunoglobulins --- Pharmacology --- Genetics --- Immunomodulation --- Immune System Phenomena --- Investigative Techniques --- Sequence Analysis --- Receptors, Immunologic --- Biological Science Disciplines --- Biology --- Health Occupations --- Immunoproteins --- Analytical, Diagnostic and Therapeutic Techniques and Equipment --- Phenomena and Processes --- Biological Therapy --- Serum Globulins --- Genetic Techniques --- Globulins --- Blood Proteins --- Disciplines and Occupations --- Receptors, Cell Surface --- Therapeutics --- Natural Science Disciplines --- Membrane Proteins --- Proteins --- Amino Acids, Peptides, and Proteins --- Chemicals and Drugs --- Pathology --- Pharmacy, Therapeutics, & Pharmacology --- Medicine --- Health & Biological Sciences --- Human genetics. --- Medicine. --- Cancer research. --- Molecular biology. --- Pharmacology. --- Biomedicine. --- Human Genetics. --- Cancer Research. --- Pharmacology/Toxicology. --- Molecular Medicine. --- Heredity, Human --- Human biology --- Physical anthropology --- Oncology. --- Toxicology. --- Clinical sciences --- Medical profession --- Life sciences --- Medical sciences --- Physicians --- Chemicals --- Poisoning --- Poisons --- Tumors --- Toxicology --- Health Workforce --- Molecular biochemistry --- Molecular biophysics --- Biochemistry --- Biophysics --- Biomolecules --- Systems biology --- Drug effects --- Medical pharmacology --- Chemotherapy --- Drugs --- Pharmacy --- Cancer research --- Physiological effect
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