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This volume reviews the latest development in production, stabilization and structural analysis techniques of membrane proteins. It contains 14 chapters exploring topics including the advances in heterologous expression systems, stabilization tools and structural methods that contributed to the growing number of recombinant integral membrane protein structures solved in the past few years. Each chapter was written by internationally renowned scientists in the field of membrane proteins structural characterization. Membrane proteins account for roughly 30 percent of all open reading frames in fully sequenced genomes. However, to date, atomic structures have so far been obtained for only 424 integral membrane proteins, with 100 new structures determined in the last two years. Only 10 percent of the unique integral membrane protein structures are derived from vertebrates. In general, integral membrane proteins are present in tissues at very low concentration, making production of recombinant proteins in heterologous systems suitable for large scale production a prerequisite for structural studies. Since the first atomic structures of recombinant mammalian integral membrane proteins published in 2005 (the calcium ATPase SERCA 1A and a voltage-dependent potatium channel), the structures of 37 recombinant mammalian integral membrane proteins, from which 20 belong to the G Protein Coupled Receptors family, have been solved.
Chemical structure --- Biomembranes --- Histology. Cytology --- General biochemistry --- Biology --- celmembranen --- membranen (biologie) --- protein-engineering --- biochemie --- biologie --- cytologie --- histologie --- eiwitten --- moleculaire biologie
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Non-vesicular intracellular cholesterol transport is an important mechanism for maintaining membrane cholesterol homeostasis. Recent reports of studies directed at soluble cholesterol transport proteins indicate that aberrant expression of the START proteins may contribute to disease states associated with disorders in cholesterol homeostasis. This is an exciting new direction in the field and the purpose of this book will be to highlight the current research directed at potential roles for the START family in diabetes, cancer, and atherogenesis. This book also provides a personal and historical perspective of the discovery-to-publication journey that the authors had for their particular START domain family member. The goal will be to provide perspectives to graduate students, post-doctoral fellows, and endocrinology fellows on the research discovery process.
Chemical structure --- General biochemistry --- Human biochemistry --- Pathological endocrinology --- medische biochemie --- protein-engineering --- biochemie --- endocrinologie --- eiwitten --- moleculaire biologie
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Molecular chaperones are a fundamental group of proteins that have been identified only relatively recently. They are key components of a protein quality machinery in the cell which insures that the folding process of any newly-synthesized polypeptide chain results in the formation of a properly folded protein and that the folded protein is maintained in an active conformation throughout its functional lifetime. Molecular chaperones have been shown to play essential roles in cell viability under both normal and stress conditions. Chaperones can also assist in the unfolding and degradation of misfolded proteins and in disaggregating preformed protein aggregates. Chaperones are also involved in other cellular functions including protein translocation across membranes, vesicle fusion events, and protein secretion. In recent years, tremendous advances have been made in our understanding of the biology, biochemistry, and biophysics of function of molecular chaperones. In addition, recent technical developments in the fields of proteomics and genomics allowed us to obtain a global view of chaperone interaction networks. Finally, there is now a growing interest in the role of molecular chaperones in diseases. This book will provide a comprehensive analysis of the structure and function of the diverse systems of molecular chaperones and their role in cell stress responses and in diseases from a global network perspective.
Chemical structure --- General biochemistry --- Biology --- Human biochemistry --- Biotechnology --- medische biochemie --- protein-engineering --- proteomics --- genomics --- biochemie --- biologie --- biotechnologie --- eiwitten --- moleculaire biologie
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After transcription in the nucleus, RNA binding proteins (RBPs) recognize cis-regulatory RNA elements within pre-mRNA sequence to form mRNA-protein (mRNP) complexes. Similarly to DNA binding proteins such as transcription factors that regulate gene expression by binding to DNA elements in the promoters of genes, RBPs regulate the fate of target RNAs by interacting with specific sequences or RNA secondary structural features within the transcribed RNA molecule. The set of functional RNA elements recognized by RBPs within target RNAs and which control the temporal, functional and spatial dynamics of the target RNA define a putative “mRNP code”. These cis-regulatory RNA elements can be found in the 5’ and 3’ untranslated regions (UTRs), introns, and exons of all protein-coding genes. RNA elements in 5’ and 3’ UTRs are frequently involved in targeting RNA to specific cellular compartments, affecting 3’ end formation, controlling RNA stability and regulating mRNA translation. RNA elements in introns and exons are known to function as splicing enhancers or silencers during the splicing process from pre-mRNA to mature mRNA. This book provides case studies of RNA binding proteins that regulate aspects of RNA processing that are important for fundamental understanding of diseases and development. Chapters include systems-level perspectives, mechanistic insights into RNA processing and RNA Binding proteins in genetic variation, development and disease. The content focuses on systems biology and genomics of RNA Binding proteins and their relation to human diseases.
Chemical structure --- Genetics --- General biochemistry --- Molecular biology --- Biology --- Biotechnology --- protein-engineering --- genomics --- biochemie --- biologie --- biotechnologie --- eiwitten --- moleculaire biologie --- genexpressie
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This book focuses on the application of fluorescence to study motor proteins (myosins, kinesins, DNA helicases and RNA polymerases). It is intended for a large community of biochemists, biophysicists and cell biologists who study a diverse collection of motor proteins. It can be used by researchers to gain an insight into their first experiments, or by experienced researchers who are looking to expand their research to new areas. Each chapter provides valuable advice for executing the experiments, along with detailed background knowledge in order to develop own experiments.
Chemical structure --- Histology. Cytology --- General biochemistry --- Biology --- protein-engineering --- biochemie --- biologie --- cytologie --- histologie --- eiwitten --- polymeren --- moleculaire biologie
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This second of two volumes discusses subfamily proteins involved in nucleo-cytoplasmic and vesicular transport mechanisms inside the cell. In this volume, the focus lies on the Rab, Ran and Arf subfamily members. Like Volume 1, the book was written by internationally renowned scientists in the field of small G-proteins. The biochemistry, structure, function and G-protein/effector interactions are described in detailed reviews. Together with Volume 1, this book provides a comprehensive and state-of-the-art work on small G-proteins (GTPases). It was written for graduates and professors in biochemistry and cell biology interested in the mechanism and function of small G-proteins, but also offers an extremely valuable resource for those readers who are new to the field.
Chemical structure --- Histology. Cytology --- General biochemistry --- Biology --- moleculaire structuur --- protein-engineering --- biochemie --- biologie --- cytologie --- histologie --- eiwitten --- moleculaire biologie
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In this brief, Vladimir Uversky discusses the paradigm-shifting phenomenon of intrinsically disordered proteins (IDPs) and hybrid proteins containing ordered domains and functional IDP regions (IDPRs). Beginning with an introduction to the concept of protein intrinsic disorder, Uversky then goes on to describe the peculiar amino acid sequences of IDPs, their structural heterogeneity, typical functions and disorder-based binding modes. In the final sections, Uversky discusses IDPs in human diseases and as potential drug targets. This volume provides a snapshot to researchers entering the field as well as providing a current overview for more experienced scientists in related areas.
Chemical structure --- General biochemistry --- Biology --- Clinical chemistry --- moleculaire structuur --- klinische chemie --- medische chemie --- biochemie --- biologie --- eiwitten --- moleculaire biologie
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In this volume, a detailed description of cutting-edge computational methods applied to protein modelling as well as specific applications are presented. Chapters include: quantum mechanical calculations on small protein models, the application of Car-Parrinello simulations to enzyme mechanisms, recent development of QM/MM methods, polarizable force fields, protein electrostatics, coarse-grained models, structure prediction of transmembrane proteins, molecular dynamics related to NMR spectroscopy, ligand docking, finite element methods for proteins as well as absorption-distribution-metabolism-excretion-toxicity prediction based on protein structures. An emphasis is laid on the clear presentation of complex concepts, since the book is primarily aimed at Ph.D. students, who need an insight into up-to-date protein modelling. A large number of descriptive, colour figures will allow the reader to get a pictorial representation of complicated structural issues.
Chemical structure --- Organic chemistry --- Chemistry --- General biochemistry --- Computer. Automation --- organische chemie --- protein-engineering --- biochemie --- chemie --- informatica --- eiwitten --- moleculaire biologie --- enzymen
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This first of two volumes provides a general overview of the genetics, structure, mechanism and regulation of the Ras superfamily proteins and describes in detail the signaling pathways and processes regulated by specific members of this family. The focus of this first volume is on the Rho and Ras subfamily of small G proteins. Renowned scientists provide insights into the biochemistry of the classical and non-classical small G-protein family members, their spatio-temporal regulation, their effectors and their roles in health and disease. Together with Volume 2, this book provides a comprehensive and state-of-the-art work on small G-proteins (GTPases). It is intended for graduates and professors in biochemistry and cell biology already working on small G-proteins (small GTPases), but also offers an extremely valuable resource for those readers who are new to the field.
Chemical structure --- Histology. Cytology --- General biochemistry --- Biology --- moleculaire structuur --- protein-engineering --- biochemie --- biologie --- cytologie --- histologie --- eiwitten --- moleculaire biologie
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The fascinating machinery that life uses to harness energy is the focus of this volume of the Advances in Photosynthesis and Respiration Series. Experts in the field communicate their insights into the mechanisms that govern biological energy conversion from the atomic scale to the physiological integration within organisms. By leveraging the power of current structural techniques the authors reveal the inner workings of our biosphere.
Chemical structure --- General microbiology --- Histology. Cytology --- General biochemistry --- Biology --- moleculaire structuur --- fotosynthese --- biochemie --- biologie --- microbiologie --- bacteriologie --- cytologie --- eiwitten --- moleculaire biologie
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