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Microarrays & microplates : applications in biomedical sciences
Authors: ---
ISBN: 185996074X 9781859960745 Year: 2003 Publisher: Oxford BIOS Scientific Publishers

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Abstract


The 'Advanced Methods' series is intended for advanced undergraduates, 
postgraduates and established research scientists. Titles in the series 
are designed to cover current important areas of research in life 
sciences, and include both theoretical background and detailed 
protocols. The aim is to give researchers sufficient theory, supported 
by references, to take the given protocols and adapt them to their 
particular experimental systems. Microarrays and Microplates title 
looks at the new microarray and microplate-based technologies which 
facilitate large-scale analysis of DNA sequence variants, mRNA 
molecules and proteins. The book provides a review of the various 
methodologies being used to identify genetic variants and gene 
regulation and guides readers through both the application of these 
methodologies and experimental procedures.


A practical approach to microarray data analysis
Authors: --- --- ---
ISBN: 1402072600 0306478153 9781441912268 9781402072604 9780306478154 Year: 2003 Publisher: Boston, MA : Springer US,

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Abstract

In the past several years, DNA microarray technology has attracted tremendous interest in both the scientific community and in industry. With its ability to simultaneously measure the activity and interactions of thousands of genes, this modern technology promises unprecedented new insights into mechanisms of living systems. Currently, the primary applications of microarrays include gene discovery, disease diagnosis and prognosis, drug discovery (pharmacogenomics), and toxicological research (toxicogenomics). Typical scientific tasks addressed by microarray experiments include the identification of coexpressed genes, discovery of sample or gene groups with similar expression patterns, identification of genes whose expression patterns are highly differentiating with respect to a set of discerned biological entities (e.g., tumor types), and the study of gene activity patterns under various stress conditions (e.g., chemical treatment). More recently, the discovery, modeling, and simulation of regulatory gene networks, and the mapping of expression data to metabolic pathways and chromosome locations have been added to the list of scientific tasks that are being tackled by microarray technology. Each scientific task corresponds to one or more so-called data analysis tasks. Different types of scientific questions require different sets of data analytical techniques. Broadly speaking, there are two classes of elementary data analysis tasks, predictive modeling and pattern-detection. Predictive modeling tasks are concerned with learning a classification or estimation function, whereas pattern-detection methods screen the available data for interesting, previously unknown regularities or relationships.

Keywords

DNA microarrays. --- DNA microarrays --- Puces à ADN --- EPUB-LIV-FT SPRINGER-B --- Oligonucleotide Array Sequence Analysis --- Molecular Probe Techniques --- Sequence Analysis --- Nucleic Acid Hybridization --- Microarray Analysis --- Investigative Techniques --- Genetic Techniques --- Microchip Analytical Procedures --- Analytical, Diagnostic and Therapeutic Techniques and Equipment --- Chemistry Techniques, Analytical --- Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- Analytical Chemistry Methods --- Analytical Chemistry Techniques --- Analytical Chemistry Method --- Analytical Chemistry Technique --- Chemistry Method, Analytical --- Chemistry Methods, Analytical --- Chemistry Technique, Analytical --- Method, Analytical Chemistry --- Methods, Analytical Chemistry --- Technique, Analytical Chemistry --- Techniques, Analytical Chemistry --- Microchip Analysis --- Analyses, Microchip --- Analysis, Microchip --- Analytical Procedure, Microchip --- Analytical Procedures, Microchip --- Microchip Analytical Procedure --- Procedure, Microchip Analytical --- Procedures, Microchip Analytical --- Micromanipulation --- Nanotechnology --- Lab-On-A-Chip Devices --- Genetic Technic --- Genetic Technics --- Genetic Technique --- Technic, Genetic --- Technics, Genetic --- Technique, Genetic --- Techniques, Genetic --- Genetics --- Genetic Counseling --- Genetic Phenomena --- Investigative Technics --- Investigative Technic --- Investigative Technique --- Technic, Investigative --- Technics, Investigative --- Technique, Investigative --- Techniques, Investigative --- Microarray Analytical Devices --- Microarray Microchips --- Nanoarray Analytical Devices --- Analysis, Microarray --- Analytical Device, Microarray --- Analytical Device, Nanoarray --- Analytical Devices, Microarray --- Analytical Devices, Nanoarray --- Device, Microarray Analytical --- Device, Nanoarray Analytical --- Devices, Microarray Analytical --- Devices, Nanoarray Analytical --- Microarray Analytical Device --- Microarray Microchip --- Microchip, Microarray --- Microchips, Microarray --- Nanoarray Analytical Device --- Genomic Hybridization --- Acid Hybridization, Nucleic --- Acid Hybridizations, Nucleic --- Genomic Hybridizations --- Hybridization, Genomic --- Hybridization, Nucleic Acid --- Hybridizations, Genomic --- Hybridizations, Nucleic Acid --- Nucleic Acid Hybridizations --- DNA --- Nucleic Acid Probes --- Oligonucleotide Probes --- Analysis, Sequence --- Determination, Sequence --- Determinations, Sequence --- Sequence Determinations --- Sequence Determination --- Analyses, Sequence --- Sequence Analyses --- Molecular Probe Technic --- Molecular Probe Technics --- Molecular Probe Technique --- Technic, Molecular Probe --- Technics, Molecular Probe --- Technique, Molecular Probe --- Techniques, Molecular Probe --- Probe Technic, Molecular --- Probe Technics, Molecular --- Probe Technique, Molecular --- Probe Techniques, Molecular --- DNA Arrays --- DNA Chips --- DNA Microchips --- Gene Chips --- Oligodeoxyribonucleotide Array Sequence Analysis --- Oligonucleotide Microarrays --- Sequence Analysis, Oligonucleotide Array --- cDNA Arrays --- DNA Microarrays --- Oligonucleotide Arrays --- cDNA Microarrays --- Array, DNA --- Array, Oligonucleotide --- Array, cDNA --- Arrays, DNA --- Arrays, Oligonucleotide --- Arrays, cDNA --- Chip, DNA --- Chip, Gene --- Chips, DNA --- Chips, Gene --- DNA Array --- DNA Chip --- DNA Microarray --- DNA Microchip --- Gene Chip --- Microarray, DNA --- Microarray, Oligonucleotide --- Microarray, cDNA --- Microarrays, DNA --- Microarrays, Oligonucleotide --- Microarrays, cDNA --- Microchip, DNA --- Microchips, DNA --- Oligonucleotide Array --- Oligonucleotide Microarray --- cDNA Array --- cDNA Microarray --- Combinatorial Chemistry Techniques --- Gene Expression Profiling --- DNA biochips --- Biochips --- Immobilized nucleic acids --- methods

Microarray bioinformatics
Author:
ISBN: 1107136008 1280163399 9786610163397 0511078471 0511121113 0511204590 0511561962 0511615531 0511076908 9780511078477 9780511076909 9780511121111 9780511615535 9781280163395 0521819822 052152587X 9780521819824 9780521525879 9781107136007 6610163391 9780511204593 9780511561962 Year: 2003 Publisher: Cambridge New York Cambridge University Press

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This book is a comprehensive guide to all of the mathematics, statistics and computing you will need to successfully operate DNA microarray experiments. It is written for researchers, clinicians, laboratory heads and managers, from both biology and bioinformatics backgrounds, who work with, or who intend to work with microarrays. The book covers all aspects of microarray bioinformatics, giving you the tools to design arrays and experiments, to analyze your data, and to share your results with your organisation or with the international community. There are chapters covering sequence databases, oligonucleotide design, experimental design, image processing, normalisation, identifying differentially expressed genes, clustering, classification and data standards. The book is based on the highly successful Microarray Bioinformatics course at Oxford University, and therefore is ideally suited for teaching the subject at postgraduate or professional level.

Keywords

DNA microarrays. --- Computational Biology --- Gene Expression Profiling --- Oligonucleotide Array Sequence Analysis --- Nucleic Acid Hybridization --- Sequence Analysis --- Biology --- Genetic Techniques --- Molecular Probe Techniques --- Microarray Analysis --- Biological Science Disciplines --- Investigative Techniques --- Microchip Analytical Procedures --- Natural Science Disciplines --- Chemistry Techniques, Analytical --- Analytical, Diagnostic and Therapeutic Techniques and Equipment --- Disciplines and Occupations --- Animal Biochemistry --- Human Anatomy & Physiology --- Health & Biological Sciences --- Analytical Chemistry Methods --- Analytical Chemistry Techniques --- Analytical Chemistry Method --- Analytical Chemistry Technique --- Chemistry Method, Analytical --- Chemistry Methods, Analytical --- Chemistry Technique, Analytical --- Method, Analytical Chemistry --- Methods, Analytical Chemistry --- Technique, Analytical Chemistry --- Techniques, Analytical Chemistry --- Natural Sciences --- Physical Sciences --- Discipline, Natural Science --- Disciplines, Natural Science --- Natural Science --- Natural Science Discipline --- Physical Science --- Science, Natural --- Science, Physical --- Sciences, Natural --- Sciences, Physical --- Microchip Analysis --- Analyses, Microchip --- Analysis, Microchip --- Analytical Procedure, Microchip --- Analytical Procedures, Microchip --- Microchip Analytical Procedure --- Procedure, Microchip Analytical --- Procedures, Microchip Analytical --- Micromanipulation --- Nanotechnology --- Lab-On-A-Chip Devices --- Investigative Technics --- Investigative Technic --- Investigative Technique --- Technic, Investigative --- Technics, Investigative --- Technique, Investigative --- Techniques, Investigative --- Biologic Sciences --- Biological Science --- Science, Biological --- Sciences, Biological --- Biological Sciences --- Life Sciences --- Biologic Science --- Biological Science Discipline --- Discipline, Biological Science --- Disciplines, Biological Science --- Life Science --- Science Discipline, Biological --- Science Disciplines, Biological --- Science, Biologic --- Science, Life --- Sciences, Biologic --- Sciences, Life --- Microarray Analytical Devices --- Microarray Microchips --- Nanoarray Analytical Devices --- Analysis, Microarray --- Analytical Device, Microarray --- Analytical Device, Nanoarray --- Analytical Devices, Microarray --- Analytical Devices, Nanoarray --- Device, Microarray Analytical --- Device, Nanoarray Analytical --- Devices, Microarray Analytical --- Devices, Nanoarray Analytical --- Microarray Analytical Device --- Microarray Microchip --- Microchip, Microarray --- Microchips, Microarray --- Nanoarray Analytical Device --- Molecular Probe Technic --- Molecular Probe Technics --- Molecular Probe Technique --- Technic, Molecular Probe --- Technics, Molecular Probe --- Technique, Molecular Probe --- Techniques, Molecular Probe --- Probe Technic, Molecular --- Probe Technics, Molecular --- Probe Technique, Molecular --- Probe Techniques, Molecular --- Genetic Technic --- Genetic Technics --- Genetic Technique --- Technic, Genetic --- Technics, Genetic --- Technique, Genetic --- Techniques, Genetic --- Genetics --- Genetic Counseling --- Genetic Phenomena --- Analysis, Sequence --- Determination, Sequence --- Determinations, Sequence --- Sequence Determinations --- Sequence Determination --- Analyses, Sequence --- Sequence Analyses --- Genomic Hybridization --- Acid Hybridization, Nucleic --- Acid Hybridizations, Nucleic --- Genomic Hybridizations --- Hybridization, Genomic --- Hybridization, Nucleic Acid --- Hybridizations, Genomic --- Hybridizations, Nucleic Acid --- Nucleic Acid Hybridizations --- DNA --- Nucleic Acid Probes --- Oligonucleotide Probes --- DNA Arrays --- DNA Chips --- DNA Microchips --- Gene Chips --- Oligodeoxyribonucleotide Array Sequence Analysis --- Oligonucleotide Microarrays --- Sequence Analysis, Oligonucleotide Array --- cDNA Arrays --- DNA Microarrays --- Oligonucleotide Arrays --- cDNA Microarrays --- Array, DNA --- Array, Oligonucleotide --- Array, cDNA --- Arrays, DNA --- Arrays, Oligonucleotide --- Arrays, cDNA --- Chip, DNA --- Chip, Gene --- Chips, DNA --- Chips, Gene --- DNA Array --- DNA Chip --- DNA Microarray --- DNA Microchip --- Gene Chip --- Microarray, DNA --- Microarray, Oligonucleotide --- Microarray, cDNA --- Microarrays, DNA --- Microarrays, Oligonucleotide --- Microarrays, cDNA --- Microchip, DNA --- Microchips, DNA --- Oligonucleotide Array --- Oligonucleotide Microarray --- cDNA Array --- cDNA Microarray --- Combinatorial Chemistry Techniques --- Gene Expression Monitoring --- Transcriptome Analysis --- Gene Expression Pattern Analysis --- Transcript Expression Analysis --- Transcriptome Profiling --- mRNA Differential Display --- Analyses, Transcript Expression --- Analyses, Transcriptome --- Analysis, Transcript Expression --- Analysis, Transcriptome --- Differential Display, mRNA --- Differential Displays, mRNA --- Display, mRNA Differential --- Displays, mRNA Differential --- Gene Expression Monitorings --- Gene Expression Profilings --- Monitoring, Gene Expression --- Monitorings, Gene Expression --- Profiling, Gene Expression --- Profiling, Transcriptome --- Profilings, Gene Expression --- Profilings, Transcriptome --- Transcript Expression Analyses --- Transcriptome Analyses --- Transcriptome Profilings --- mRNA Differential Displays --- Gene Expression --- Transcriptome --- Subtractive Hybridization Techniques --- Bio-Informatics --- Biology, Computational --- Computational Molecular Biology --- Bioinformatics --- Molecular Biology, Computational --- Bio Informatics --- Bio-Informatic --- Bioinformatic --- Biologies, Computational Molecular --- Biology, Computational Molecular --- Computational Molecular Biologies --- Molecular Biologies, Computational --- Computational Chemistry --- Genomics --- methods --- DNA microarrays --- Bioinformatics. --- Mathematics. --- Data processing. --- Statistical methods. --- Bio-informatics --- Biological informatics --- Information science --- Computational biology --- Systems biology --- DNA biochips --- Biochips --- Immobilized nucleic acids --- Data processing

Design and analysis of DNA microarray investigations
Authors: --- ---
ISBN: 0387001352 9786610188130 1280188138 0387218661 Year: 2003 Publisher: New York (N.Y.): Springer

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This book is targeted to biologists with limited statistical background and to statisticians and computer scientists interested in being effective collaborators on multi-disciplinary DNA microarray projects. State-of-the-art analysis methods are presented with minimal mathematical notation and a focus on concepts. This book is unique because it is authored by statisticians at the National Cancer Institute who are actively involved in the application of microarray technology. Many laboratories are not equipped to effectively design and analyze studies that take advantage of the promise of microarrays. Many of the software packages available to biologists were developed without involvement of statisticians experienced in such studies and contain tools that may not be optimal for particular applications. This book provides a sound preparation for designing microarray studies that have clear objectives, and for selecting analysis tools and strategies that provide clear and valid answers. The book offers an in depth understanding of the design and analysis of experiments utilizing microarrays and should benefit scientists regardless of what software packages they prefer. In order to provide all readers with hands on experience in data analysis, it includes an Appendix tutorial on the use of BRB-ArrayTools and step by step analyses of several major datasets using this software which is freely available from the National Cancer Institute for non-commercial use. The authors are current or former members of the Biometric Research Branch at the National Cancer Institute. They have collaborated on major biomedical studies utilizing microarrays and in the development of statistical methodology for the design and analysis of microarray investigations. Dr. Simon, chief of the branch, is also the architect of BRB-ArrayTools.

Keywords

Mathematical statistics --- DNA microarrays --- Puces à ADN --- Statistical methods --- Méthodes statistiques --- DNA microarrays -- Statistical methods. --- Electronic books. -- local. --- Genetics -- Research. --- Statistics as Topic --- Decision Support Techniques --- Molecular Probe Techniques --- Methods --- Sequence Analysis --- Microarray Analysis --- Nucleic Acid Hybridization --- Research --- Genetic Techniques --- Medical Informatics Applications --- Investigative Techniques --- Microchip Analytical Procedures --- Epidemiologic Methods --- Science --- Health Care Evaluation Mechanisms --- Chemistry Techniques, Analytical --- Analytical, Diagnostic and Therapeutic Techniques and Equipment --- Natural Science Disciplines --- Quality of Health Care --- Medical Informatics --- Public Health --- Environment and Public Health --- Information Science --- Health Care Quality, Access, and Evaluation --- Disciplines and Occupations --- Health Care --- Data Interpretation, Statistical --- Research Design --- Oligonucleotide Array Sequence Analysis --- Human Anatomy & Physiology --- Health & Biological Sciences --- Animal Biochemistry --- 519.242 --- 577.212 --- Experimental design. Optimal designs. Block designs --- Central dogma of molecular biology. Coding of inheritance information. The genetic code and its chemical nature --- 577.212 Central dogma of molecular biology. Coding of inheritance information. The genetic code and its chemical nature --- 519.242 Experimental design. Optimal designs. Block designs --- Genetics --- Statistical methods. --- Research. --- Puces à ADN --- Méthodes statistiques --- EPUB-LIV-FT SPRINGER-B --- Medicine. --- Cancer research. --- Molecular biology. --- Pharmacology. --- Health informatics. --- Bioinformatics. --- Statistics. --- Biomedicine. --- Cancer Research. --- Statistics for Life Sciences, Medicine, Health Sciences. --- Molecular Medicine. --- Pharmacology/Toxicology. --- Health Informatics. --- DNA biochips --- Microarrays, DNA --- Biochips --- Immobilized nucleic acids --- Oncology. --- Toxicology. --- Medical records --- Data processing. --- Statistics . --- Clinical informatics --- Health informatics --- Medical information science --- Information science --- Medicine --- Drug effects --- Medical pharmacology --- Medical sciences --- Chemicals --- Chemotherapy --- Drugs --- Pharmacy --- Molecular biochemistry --- Molecular biophysics --- Biochemistry --- Biophysics --- Biomolecules --- Systems biology --- Statistical analysis --- Statistical data --- Statistical science --- Mathematics --- Econometrics --- Bio-informatics --- Biological informatics --- Biology --- Computational biology --- Cancer research --- Data processing --- Physiological effect

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