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The release of cytokines, chemokines, and other immune-modulating mediators released from innate immune cells, including eosinophils, neutrophils, macrophages, dendritic cells, mast cells, and epithelial cells, is an important event in immunity. Cytokine synthesis and transportation occurs through the canonical protein trafficking pathway associated with endoplasmic reticulum and Golgi. How cytokines are released upon their exit from the trans-Golgi network varies enormously between cell types, and in many cells this has not yet been characterized. This issue delves into the plethora of cytokines released by innate immune cells, and where possible, shines light on specific mechanisms that regulate trafficking and release of Golgi-derived vesicles. Each cell type also shows varying degrees of dependency on microtubule organization and actin cytoskeleton remodeling for cytokine secretion. Understanding the mechanisms of cytokine secretion will reveal the inner workings of individual innate immune cell types, and allow identification of critical regulatory steps in cytokine release.
Cytokines. --- Chemokines. --- secretory granules --- Dendritic Cells --- GTPases --- SNAREs --- Neutrophils --- Epithelial Cells --- degranulation --- Macrophages --- Recycling endosomes --- Eosinophils
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Au cours de ce travail, nous nous sommes intéressés au rôle de vésicules dérivées des mitochondries dans la maturation des endosomes. Au sein du laboratoire, il a été observé que des protéines de la membrane externe mitochondriale (MEM) étaient recrutées au niveau des endosomes précoces dans des cellules endothéliales en réponse à un traitement au VEGF, un facteur de croissance impliqué de manière majoritaire dans la régulation de l’angiogenèse. Les contacts entre la mitochondrie et des organelles telles que les endosomes, les lysosomes ou la membrane plasmique étant reconnus, nous nous sommes intéressés aux contacts établis entre les endosomes et les mitochondries. Nous avons observé que des contacts pouvaient s’établir via la production de structures semblant dériver des mitochondries (porteuses du marqueur TOM20 typique de la MEM) suite au traitement au VEGF. La caractérisation du contenu protéique de ces structures suite au développement d’un protocole de purification nous a permis d’identifier différents cargos, dont certains se retrouvaient également au niveau des endosomes précoces après un traitement au VEGF. Nous avons essayé de comprendre le rôle de ces vésicules TOM20+ en ciblant des acteurs nécessaires pour leur biogenèse ou leur trafic intracellulaire (les protéines VPS34 ou Syntaxine 17). Leur diminution d’expression nous a permis d’observer une altération du recrutement endosomal des protéines de la MEM dans ces conditions. Par ailleurs, nous avons pu déterminer que ces protéines VPS34 et Syntaxine 17 sont des inhibiteurs de l’angiogenèse in vitro. Finalement, nous avons démontré que ces vésicules TOM20+ permettent le recrutement de la protéine RAB5 dans le compartiment endosomal, ce qui permet la maturation des endosomes précoces en endosomes tardifs.
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This book covers the molecular structures and the cellular and in vivo function of endosomes and lysosomes, i.e. intracellular vesicles which are involved in many cellular processes such as endocytosis, intracellular trafficking, degradation of material from inside (e.g. autophagy) and outside the cell as well as exocytosis. Membranes of endolysosomal organelles contain an amazing number and diversity of ion channels. These ion channels are the topic of the present book that focusses on describing the structure, the biophysical properties, physiological functions of endolysosomal ion channels at the molecular, cellular and in vivo level. .
Histology. Cytology --- Biology --- History of human medicine --- Human physiology --- farmacologie --- biologie --- fysiologie --- cytologie --- histologie --- Endosomes. --- Ion channels. --- Lysosomes.
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Endosomes are a heterogeneous population of endocytic vesicles and tubules that have captivated the interest of biologists for many years, partly due to their important cellular functions and partly due to their intriguing nature and dynamics. Endosomes represent a fascinating interconnected network of thousands of vesicles that transport various cargoes, mainly proteins and lipids, to distant cellular destinations. How endosomes function, what co-ordinates the molecular determinants at each step of their dynamic life cycle and what their biological and medical relevance is, are among the questions addressed in this book.
Endosomes. --- Receptosomes --- Cell organelles --- Cytology. --- Biochemistry. --- Medicine. --- Cell Biology. --- Biochemistry, general. --- Molecular Medicine. --- Clinical sciences --- Medical profession --- Human biology --- Life sciences --- Medical sciences --- Pathology --- Physicians --- Biological chemistry --- Chemical composition of organisms --- Organisms --- Physiological chemistry --- Biology --- Chemistry --- Cell biology --- Cellular biology --- Cells --- Cytologists --- Composition --- Health Workforce --- Cell biology. --- Molecular biology. --- Molecular biochemistry --- Molecular biophysics --- Biochemistry --- Biophysics --- Biomolecules --- Systems biology
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This Special Issue of Entropy, titled “Recent Advances in Single-Particle Tracking: Experiment and Analysis”, contains a collection of 13 papers concerning different aspects of single-particle tracking, a popular experimental technique that has deeply penetrated molecular biology and statistical and chemical physics. Presenting original research, yet written in an accessible style, this collection will be useful for both newcomers to the field and more experienced researchers looking for some reference. Several papers are written by authorities in the field, and the topics cover aspects of experimental setups, analytical methods of tracking data analysis, a machine learning approach to data and, finally, some more general issues related to diffusion.
Research & information: general --- Physics --- diauxic growth --- replicator equation --- mesoscopic model --- integro-differential equations --- anomalous diffusion --- statistical analysis --- single-particle tracking --- trajectory classification --- fractional Brownian motion --- estimation --- autocovariance function --- neural network --- Monte Carlo simulations --- multifractional Brownian motion --- power of the statistical test --- machine learning classification --- feature engineering --- confinement --- information theory --- Brownian particle --- stochastic thermodynamics --- CTRW --- diffusing-diffusivity --- occupation time statistics --- wound healing dynamics --- single pseudo-particle tracking --- phase contrast image segmentation --- 3D single-particle tracking --- Fisher information --- non-uniform illumination --- SPT --- deep learning --- residual neural networks --- random walk --- heterogeneous --- endosomes --- single particle trajectory --- stochastic processes --- trapping
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