Listing 1 - 9 of 9 |
Sort by
|
Choose an application
Meiosis, the process of forming gametes in preparation for sexual reproduction, has long been a focus of intense study. Meiosis has been studied at the cytological, genetic, molecular and cellular levels. Studies in model systems have revealed common underlying mechanisms while in parallel, studies in diverse organisms have revealed the incredible variation in meiotic mechanisms. This book brings together many of the diverse strands of investigation into this fascinating and challenging field of biology.
Meiosis. --- Reduction division (Genetics) --- Cell division --- Karyokinesis --- Medical genetics
Choose an application
With the emergence of Systems Biology, there is a greater realization that the whole behavior of a living system may not be simply described as the sum of its elements. To represent a living system using mathematical principles, practical quantities with units are required. Quantities are not only the bridge between mathematical description and biological observations; they often stand as essential elements similar to genome information in genetics. This important realization has greatly rejuvenated research in the area of Quantitative Biology. Because of the increased need for precise quantification, a new era of technological development has opened. For example, spatio-temporal high-resolution imaging enables us to track single molecule behavior in vivo. Clever artificial control of experimental conditions and molecular structures has expanded the variety of quantities that can be directly measured. In addition, improved computational power and novel algorithms for analyzing theoretical models have made it possible to investigate complex biological phenomena. This research topic is organized on two aspects of technological advances which are the backbone of Quantitative Biology: (i) visualization of biomolecules, their dynamics and function, and (ii) generic technologies of model optimization and numeric integration. We have also included articles highlighting the need for new quantitative approaches to solve some of the long-standing cell biology questions. In the first section on visualizing biomolecules, four cutting-edge techniques are presented. Ichimura et al. provide a review of quantum dots including their basic characteristics and their applications (for example, single particle tracking). Horisawa discusses a quick and stable labeling technique using click chemistry with distinct advantages compared to fluorescent protein tags. The relatively small physical size, stability of covalent bond and simple metabolic labeling procedures in living cells provides this type of technology a potential to allow long-term imaging with least interference to protein function. Obien et al. review strategies to control microelectrodes for detecting neuronal activity and discuss techniques for higher resolution and quality of recordings using monolithic integration with on-chip circuitry. Finally, the original research article by Amariei et al. describes the oscillatory behavior of metabolites in bacteria. They describe a new method to visualize the periodic dynamics of metabolites in large scale cultures populations. These four articles contribute to the development of quantitative methods visualizing diverse targets: proteins, electrical signals and metabolites. In the second section of the topic, we have included articles on the development of computational tools to fully harness the potential of quantitative measurements through either calculation based on specific model or validation of the model itself. Kimura et al. introduce optimization procedures to search for parameters in a quantitative model that can reproduce experimental data. They present four examples: transcriptional regulation, bacterial chemotaxis, morphogenesis of tissues and organs, and cell cycle regulation. The original research article by Sumiyoshi et al. presents a general methodology to accelerate stochastic simulation efforts. They introduce a method to achieve 130 times faster computation of stochastic models by applying GPGPU. The strength of such accelerated numerical calculation are sometimes underestimated in biology; faster simulation enables multiple runs and in turn improved accuracy of numerical calculation which may change the final conclusion of modeling study. This also highlights the need to carefully assess simulation results and estimations using computational tools.
fluorescence chemistry --- numerical integration --- molecular crowding --- quantum dot --- cell division --- data visualization --- imaging --- model optimization --- GPGPU
Choose an application
This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
cell cycle --- nucleoid --- divisome --- cell division --- cell envelope --- cell shape --- chromosome replication --- macromolecular hyperstructures --- Escherichia coli
Choose an application
The Planctomycetes, Verrucomicrobia, Chlamydiae (PVC) and related phyla have recently emerged as fascinating subjects for research in evolutionary cell biology, ecology, biotechnology, evolution and human health. This interest is prompted by particular characteristics observed in the PVC superphylum that are otherwise rarely observed in bacteria but are however still poorly described or understood, such as the presence of a complex endomembrane system, or compacted DNA throughout most of the cell cycle. Therefore, the members of the PVC superphylum represent an excellent example of the value of studying bacteria other than ‘classical’ models.
genetic tools --- peptidoglycan --- PVC bacteria --- cell biology and cell division --- cell surface --- bioactive compounds
Choose an application
The brain consists of a complex but precisely organized neural network, which provides the structural basis of higher order functions. Such a complex structure originates from a simple pseudostratified neuroepithelium. During the developing mammalian cerebral cortex, a cohort of neural progenitors, located near the ventricle, differentiates into neurons and exhibits multi-step modes of migration toward the pial surface. Tight regulation of neurogenesis and neuronal migration is essential for the determination of the neuron number in adult brains and the proper positioning of excitatory and inhibitory neurons in a specific layer, respectively. In addition, defects in neurogenesis and neuronal migration can cause several neurological disorders, such as microcephaly, periventricular heterotopia and lissencephaly. Recent advances in genetic approaches to study the developing cerebral cortex, as well as the use of a number of novel techniques, particularly in vivo electroporation and time-lapse analyses using explant slice cultures, have significantly increased our understanding of cortical development. These novel techniques have allowed for cell biological analyses of cerebral cortical development in vivo or ex vivo, showing that many cellular events, including endocytosis, cell adhesion, microtubule and actin cytoskeletal regulation, neurotransmitter release, stress response, the consequence of cellular crowding (physical force), dynamics of transcription factors, midbody release and polarity transition are required for neurogenesis and/or neuronal migration. The aim of this research topic is to highlight molecular and cellular mechanisms underlying cerebral cortical development and its related neurological disorders from the cell biological point of views, such as cell division, cell-cycle regulation, cytoskeletal organization, cell adhesion and membrane trafficking. The topic has been organized into three chapters: 1) neurogenesis and cell fate determination, 2) neuronal migration and 3) cortical development-related neurological disorders. We hope that the results and discussions contributed by all authors in this research topic will be broadly useful for further advances in basic research, as well as improvements in the etiology and care of patients suffering from neurological and psychiatric disorders.
Endocytosis --- Cell Cycle --- Periventricular heterotopia --- Lissencephaly --- neuronal migration --- Cell Division --- Cytoskeleton --- Microcephaly --- Neurogenesis --- Cell Adhesion
Choose an application
This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
PVC bacteria --- bioactive compounds --- Peptidoglycan --- cell surface --- Genetic tools --- cell biology and cell division
Choose an application
Bacterial Physiology was inaugurated as a discipline by the seminal research of Maaløe, Schaechter and Kjeldgaard published in 1958. Their work clarified the relationship between cell composition and growth rate and led to unravel the temporal coupling between chromosome replication and the subsequent cell division by Helmstetter et al. a decade later. Now, after half a century this field has become a major research direction that attracts interest of many scientists from different disciplines. The outstanding question how the most basic cellular processes - mass growth, chromosome replication and cell division - are inter-coordinated in both space and time is still unresolved at the molecular level. Several particularly pertinent questions that are intensively studied follow: (a) what is the primary signal to place the Z-ring precisely between the two replicating and segregating nucleoids? (b) Is this coupling related to the structure and position of the nucleoid itself? (c) How does a bacterium determine and maintain its shape and dimensions? Possible answers include gene expression-based mechanisms, self-organization of protein assemblies and physical principles such as micro-phase separations by excluded volume interactions, diffusion ratchets and membrane stress or curvature. The relationships between biochemical reactions and physical forces are yet to be conceived and discovered. This e-book discusses the above mentioned and related questions. The book also serves as an important depository for state-of-the-art technologies, methods, theoretical simulations and innovative ideas and hypotheses for future testing. Integrating the information gained from various angles will likely help decipher how a relatively simple cell such as a bacterium incorporates its multitude of pathways and processes into a highly efficient self-organized system. The knowledge may be helpful in the ambition to artificially reconstruct a simple living system and to develop new antibacterial drugs.
Chromosome replication --- Bacterial growth --- divisome --- Chromosome Segregation --- Cell Cycle --- Cell Division --- Cell envelope --- size control --- model system Escherichia coli --- nucleoid
Choose an application
Polyamines are small organic compounds found in all living organisms. In recent years, there have been many exciting advances in our understanding of plant polyamines, such as the determination of the biosynthetic and catabolic pathways of plant polyamines and the identification of the roles that plant polyamines play in cellular processes. This Special Issue contains six original research papers and three review articles, providing valuable insights and information for future polyamine-related research.
polyamine oxidase --- norspermidine --- thermospermine --- Selaginella lepidophylla --- Arabidopsis thaliana mutant --- polyamines --- spermidine --- nonsense-mediated decay --- no-go decay --- non-stop decay --- quality control --- translation --- copper amine oxidases --- H2O2 --- ROS --- ABA --- stomatal closure --- back conversion pathway --- polyamine catabolism --- stress response --- terminal catabolism pathway --- Ranunculus biternatus --- Ranunculus pseudotrullifolius --- Ranunculus moseleyi --- secondary metabolite variation --- amines --- quercetins --- natural populations --- environment --- redundancy --- sub-Antarctic plants --- Arabidopsis --- phloem --- rice --- spermine --- xylem --- nitrogen metabolism --- abiotic and biotic stress --- hydrogen peroxide --- antioxidant machinery --- heat shock proteins --- heat stress --- polyamine oxidases --- PA acetylation --- PA oxidation --- PA back-conversion --- putrescine --- tomato --- spermidine synthase --- fruit shape --- cell division --- cell expansion --- copper amine oxidase
Choose an application
What is life? How, where, and when did life arise? These questions have remained most fascinating over the last hundred years. Systems chemistry is the way to go to better understand this problem and to try and answer the unsolved question regarding the origin of Life. Self-organization, thanks to the role of lipid boundaries, made possible the rise of protocells. The role of these boundaries is to separate and co-locate micro-environments, and make them spatially distinct; to protect and keep them at defined concentrations; and to enable a multitude of often competing and interfering biochemical reactions to occur simultaneously. The aim of this Special Issue is to summarize the latest discoveries in the field of the prebiotic chemistry of biomolecules, self-organization, protocells and the origin of life. In recent years, thousands of excellent reviews and articles have appeared in the literature and some breakthroughs have already been achieved. However, a great deal of work remains to be carried out. Beyond the borders of the traditional domains of scientific activity, the multidisciplinary character of the present Special Issue leaves space for anyone to creatively contribute to any aspect of these and related relevant topics. We hope that the presented works will be stimulating for a new generation of scientists that are taking their first steps in this fascinating field.
origin of life --- peptidyl-transferase center --- pseudo-symmetry --- proto-ribosome --- SymR --- emergence of biological systems --- RNA ligation --- dimerization --- standard genetic codes --- codon assignment --- tRNA --- aminoacyl-tRNA synthetase classes --- thiophene --- acetylene --- transition metal sulfides --- hydrothermal conditions --- early metabolism --- origin-of-life --- prebiotic chemistry --- protein–monosaccharide recognition --- protein–monosaccharide interactions --- FRET analysis --- glycocodon theory --- glucose oxidase --- Mars --- prebiotic chemical evolution --- early Earth --- astrobiology --- CHNOPS --- transition elements --- sample return --- exoplanets --- complex organic molecules --- astrochemistry --- interstellar medium --- molecular ices --- solid state --- protoplanetary disks --- star forming regions --- comets --- vesicles --- division --- urea–urease enzymatic reaction --- bending modulus --- budding --- ADE theory --- dynamic kinetic stability --- cognition --- chemical evolution --- systems chemistry --- metabolism --- network expansion simulation --- temperature --- thermodynamics --- protocell --- compartment --- solid interface --- lipid --- polymerization --- cyclic nucleotides --- autocatalytic set --- osmotic pressure --- cell division --- lipid membrane --- bistable reaction system --- template-directed RNA synthesis --- origin of genetic code --- time order of canonical amino acids --- proto-metabolism --- chirogenesis --- quartz --- amino acids --- radiation damage --- GC×GC-TOFMS --- origins of life --- prebiotic membranes --- protoamphiphiles --- metal ions --- hot springs --- N-acyl amino acid --- analogue conditions --- viroids --- ribozyviruses --- primordial replicators --- ribozymes --- bilayer structure --- molecular dynamics --- aggregation process --- selection --- evolution --- Fenton chemistry --- reduced phosphorus --- pyrophosphate --- chemical complexity --- minerals --- schreibersite --- olivine --- serpentinite --- ulexite --- n/a --- protein-monosaccharide recognition --- protein-monosaccharide interactions --- urea-urease enzymatic reaction
Listing 1 - 9 of 9 |
Sort by
|