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MycoKeys
ISSN: 13144057 13144049

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Abstract

Aims to apply the latest trends and methodologies in publishing and preservation of digital materials to meet the highest possible standards of the cybertaxonomy era.

Keywords

Mycology --- Phylogeny --- Botany --- Mycologie --- Botanique --- classification --- Periodicals. --- Périodiques --- Mycology. --- Phylogeny. --- Botany. --- classification. --- Open Access --- current periodical --- Fungi --- taxonomy --- peer-reviewed journal --- mycology --- fungal biology --- Microbiology --- Botanical science --- Phytobiology --- Phytography --- Phytology --- Plant biology --- Plant science --- Biology --- Natural history --- Plants --- Phylogenies --- Classification --- Phylogeography --- Infectious Disease Medicine --- Phylogenomics --- Phylogenomic --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- Floristic botany


Book
Classification phylogénétique du vivant.
Authors: --- ---
ISBN: 2701142733 9782701142739 9782701134567 2701134560 Year: 2013 Publisher: Paris Belin

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Abstract

Keywords

57.065 --- 57.065 Phylogenetic classification systems --- Phylogenetic classification systems --- Biologie --- Analyse cladistique --- Phylogenese --- Classification --- animals --- plants --- classification --- Phylogeny --- taxonomy --- Identification --- identification --- Biology --- Cladistic analysis --- Phylogenèse --- classification. --- identification. --- Sciences naturelles --- Analyse cladistique. --- Classification. --- Biologie - Classification --- Acqui 2006 --- CLADISTICS --- PHYLOGENY --- MOLECULAR SYSTEMATICS --- TEACHING MATERIALS --- CLASSIFICATION --- NATURAL HISTORY --- TEXTBOOKS --- Cladism --- Cladistic method --- Cladistic taxonomy --- Cladistics --- Cladograms --- Phylogenetic systematics --- Phylogenetic taxonomy --- Taxonomy, Cladistic --- Taxonomy, Phylogenetic --- Branching processes --- Phylogenomics --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Phylogenies --- Phylogenomic --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- Phylogeography --- Animal phylogeny --- Animals --- Phylogenetics --- Phylogeny (Zoology) --- Evolution (Biology) --- Biosystematics --- Organisms --- Systematic biology --- Systematics (Biology) --- Taxonomy (Biology) --- Taxonomists --- Natural history --- Plants --- Plantes --- animals. --- plants. --- Phylogeny. --- taxonomy. --- Cladistic analysis.


Book
The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing
Authors: --- ---
ISBN: 9780521730716 9780521877107 0521730716 0521877105 9780511819049 051173851X 1282539515 9786612539510 0511819048 0511719183 0511719639 0511515758 0511718721 0511517033 Year: 2017 Publisher: Cambridge Cambridge University press

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Abstract

The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.

Keywords

Evolution. Phylogeny --- Sequence Analysis, DNA --- Sequence Analysis, Protein --- Phylogenèse --- Models, Genetic. --- DNA phylogeny --- Amino Acid Sequence. --- -Proteins --- fylogenetica --- dna analyse --- 575.852 --- 575.852 Biomacromolecules. Molecular evolution --- Biomacromolecules. Molecular evolution --- Branching processes --- Amino Acid Sequences --- Sequence, Amino Acid --- Sequences, Amino Acid --- Protein Structure, Primary --- Primary Protein Structure --- Primary Protein Structures --- Protein Structures, Primary --- Structure, Primary Protein --- Structures, Primary Protein --- Phylogenies --- Models, genetic. --- Sequence analysis, dna --- Sequence analysis, protein --- Phylogenèse --- Phylogeny --- methods --- Computer programs. --- Amino acid sequence --- Cladistic analysis --- DNA --- Proteins --- Models, Genetic --- aminozuur --- dna --- proteine --- Academic collection --- 577.112 --- 577.212.3 --- 577.212.3 Nucleic acid base and sequence compositon. Experimental deciphering of genetic code. --- Nucleic acid base and sequence compositon. Experimental deciphering of genetic code. --- Classification --- Phylogeography --- Proteids --- Biomolecules --- Polypeptides --- Proteomics --- Deoxyribonucleic acid --- Desoxyribonucleic acid --- Thymonucleic acid --- TNA (Nucleic acid) --- Deoxyribose --- Nucleic acids --- Genes --- Cladism --- Cladistic method --- Cladistic taxonomy --- Cladistics --- Cladograms --- Phylogenetic systematics --- Phylogenetic taxonomy --- Taxonomy, Cladistic --- Taxonomy, Phylogenetic --- Biology --- Amino acid sequence analysis --- Analysis, Amino acid sequence --- Peptide sequence --- Peptide sequencing --- Protein sequence --- Protein sequencing --- Sequence, Amino acid --- Amino acids --- Sequence alignment (Bioinformatics) --- Genetic Models --- Genetic Model --- Model, Genetic --- 577.112 Proteins --- Data processing --- Analysis --- Nucleic acid base and sequence compositon. Experimental deciphering of genetic code --- Phylogenomics --- Phylogenomic --- Dna --- Phylogeny. --- Data processing. --- Methods. --- methods. --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- Molecular evolution --- Nucleotides --- Nucleotide sequence --- Molecular aspects --- DNA - Analysis - Handbooks, manuals, etc --- Proteins - Analysis - Handbooks, manuals, etc --- Cladistic analysis - Handbooks, manuals, etc --- Amino acid sequence - Data processing

The phylogenetic handbook : A practical approach to DNA and protein phylogeny.
Authors: ---
ISBN: 9780521803908 052180390X Year: 2003 Publisher: Cambridge Cambridge university press

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Abstract

The Phylogentic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As a unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the reader to the most widely-used phylogeny software including CLUSTAL, PHYLIP, PAUP*, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, and BOOTSCANNING. Chapters 1-10 provide a strong background in basic topics such as the use of sequence databases, alignment algorithms, tree-building methods, estimation of genetic distances, and testing models of evolution. Additional chapters briefly survey special topics in evolution, for example modelling evolution with networks, studying recombination, testing for positive selection, and methods in population genetics. The book will be an invaluable resource for advanced level undergraduate and graduate students, as well as for professionals working in the fields of molecular biology and evolution.

Keywords

Systematics. Taxonomy. Nomenclature --- Evolution. Phylogeny --- Analyse cladistique --- Acide aminé --- Phylogénie --- Valeur génétique --- breeding value --- Amino Acid Sequence. --- 575.852 --- 577.212.3 --- -Proteins --- Deoxyribonucleic acid --- Desoxyribonucleic acid --- Thymonucleic acid --- TNA (Nucleic acid) --- Deoxyribose --- Cladism --- Cladistic method --- Cladistic taxonomy --- Cladistics --- Cladograms --- Phylogenetic systematics --- Phylogenetic taxonomy --- Taxonomy, Cladistic --- Taxonomy, Phylogenetic --- Branching processes --- Amino Acid Sequences --- Sequence, Amino Acid --- Sequences, Amino Acid --- Protein Structure, Primary --- Primary Protein Structure --- Primary Protein Structures --- Protein Structures, Primary --- Structure, Primary Protein --- Structures, Primary Protein --- Phylogenies --- Phylogeography --- Biomacromolecules. Molecular evolution --- Nucleic acid base and sequence compositon. Experimental deciphering of genetic code. --- 577.212.3 Nucleic acid base and sequence compositon. Experimental deciphering of genetic code. --- 575.852 Biomacromolecules. Molecular evolution --- DNA phylogeny --- Cladistic analysis --- DNA --- Proteins --- Amino Acid Sequence --- Phylogeny --- Academic collection --- 575.86 --- 577.112 --- Classification --- Peptides --- Proteids --- Biomolecules --- Polypeptides --- Proteomics --- Nucleic acids --- Genes --- Biology --- 577.112 Proteins --- 575.86 Origin of groups of organisms (taxa). Phylogeny --- Origin of groups of organisms (taxa). Phylogeny --- Analysis --- analysis --- Nucleic acid base and sequence compositon. Experimental deciphering of genetic code --- Phylogenomics --- Phylogenomic --- Amino acids --- Évolution --- evolution --- taxonomy --- Identification --- identification --- computer applications --- Computer software --- ADN --- Protéines --- Handbooks, manuals, etc. --- Analyse --- Guides, manuels, etc. --- evolution. --- identification. --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- DNA - Analysis - Handbooks, manuals, etc. --- Proteins - Analysis - Handbooks, manuals, etc. --- Cladistic analysis - Handbooks, manuals, etc. --- Clustal --- Phylip --- Paup --- Dambe --- Tree-puzzle --- Trecon --- Splittree --- Treview --- Megaz --- Palm --- Simplot --- PROTEINS --- CLADISTIC ANALYSIS --- HANDBOOKS --- ANALYSIS

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