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Cell specific somatostatin recognition by pancreatic - and b-cells
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Year: 1986 Publisher: Brussel VUB

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Functional characterization of purified pancreatic b-cells: regulatory role of cyclic amp
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Year: 1988 Publisher: Brussel VUB

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Functional characterization of purified pancreatic B-cells : regulatory role of cyclic AMP : proefschrift
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Year: 1987 Publisher: Brussel

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Molecular and cellular analysis of incretin signalling in pancreatic beta cell function
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Year: 2004 Publisher: Brussel VUB

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Dissertation
Phenotypic plasticity of pancreatic islets during pregnancy : an experimental approach based on mRNA analysis.
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Year: 2010 Publisher: Leuven KUL. Faculteit geneeskunde

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Dissertation
A review on the effect of added sugar intake on uric acid
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Year: 2019 Publisher: Leuven KU Leuven. Faculteit Geneeskunde

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ABSTRACT Background: Metabolic diseases are a worldwide public health problem. The increase in dietary fructose ingestion has coincided with the increased prevalence of metabolic diseases and hyperuricemia. Research has established a metabolic pathway in the liver that links fructose metabolism to uric acid generation and animal studies have confirmed that fructose ingestion in rats leads to hyperuricemia. However definite meta-analyses demonstrating this in humans are missing. Objectives: This review aims to assess the effects of fructose ingestion on uric acid concentrations. Methods: A systematic search was carried out in September and October of 2018 to identify all relevant articles. Articles were searched on Pubmed, Embase and Cochrane. Additionally the reference lists of all included articles was also hand-searched. Results: This review included 22 articles. 13 of those trials demonstrated a significant increase of uric acid after fructose ingestion. 9 trials did not demonstrate a significant effect. Trials that did not demonstrated a significant effect were more biased. Conclusion: most qualitative studies confirm that fructose intake raises uric acid levels. Some studies raise doubt whether or not this is true but given the presence of bias at different levels in these studies, I conclude that the former group is more solid. A direct relationship between fructose ingestion and circulating uric acid levels cannot be ignored any longer.

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Dissertation
Analysis of diet-induced changes in mRNA expression of islets of Langerhans and metabolic profiling of Cox6a2-deficient mice.
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Year: 2011 Publisher: Leuven Leuven university press

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Dissertation
Studies of the mucosal gene expression defects in inflammatory bowel diseases before and after control of inflammation.
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Year: 2010 Publisher: Leuven KUL. Faculteit geneeskunde

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Dissertation
From missing bird genes to accelerated evolution in vertebrates using a genome-wide landscape approach
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Year: 2020 Publisher: Leuven KU Leuven. Faculty of Medicine

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During this PhD project, a new visualization method was developed to assess regional effects of base composition and protein evolution in vertebrate genomes. Data of neighboring genes were integrated into genome-wide landscapes with information about regions on the chromosome rather than about individual genes.We applied this new approach to further study the enigma of "missing" avian genes. More than thousand genes are currently unaccounted for in bird genomes: too many to make sense from a biological point of view. This raises the question whether these genes were really evolutionary lost or whether they still need to be discovered. Our genome landscape approach shows that these "missing" genes are concentrated in more than 10 clusters of around 100 genes of the human reference genome. In these "missing gene clusters", the majority of the genes can be found in at least one avian species, indicating they should also be present in other avian species. Those gene sequences are often partial sequences with a high amount of G and C bases. This high GC content hinders the sequencing process, leading to the artefact of missing genes. One example is the gene encoding for glucose transporter 4 (GLUT4), which is important for glucose homeostasis in vertebrates, as it is insulin-regulated and highly expressed in skeletal muscle. It was believed for decades that GLUT4 is truly "missing" in birds which are hyperglycemic according to human standards and insulin resistant. However, during this project, we have sequenced the chicken transporter and demonstrate that the gene is expressed in skeletal muscle, both on the mRNA and protein level.The location of "missing genes" in regions where the genes have high GC content and accelerated protein evolution is linked to a genetic mechanism: GC biased gene conversion. This process occurs during meiotic recombination, where mismatches are repaired with a slight bias for GC alleles. The rate of GC biased gene conversion is proportional to the recombination rate and therefore highest in subtelomeric chromosome regions. Interestingly, bird genomes have microchromosomes in which all genes can be considered as subtelomeric. We noted that even in the best characterized avian genomes some microchromosomes are not yet annotated.A second application of our landscape approach was a comparative analysis of the genomes of Eutheria (placental mammals) and Metatheria (marsupials). We identified areas of accelerated protein evolution that coincided with regions where the genes accumulate GC bases. As predicted by the model of GC biased gene conversion, such regions are most often located in subtelomeres of the human and opossum reference genomes. Interestingly, we observed landscapes with lineage-specific subtelomeric effects of GC% and protein divergence in both eutherian and metatherian genomes. The divergent accelerated evolution of specific Eutherian and Metatherian subtelomeres is proposed to have contributed to divergence of reproductive physiology and adaptive immunity in these two mammalian taxa.We anticipate that the genome-wide landscape approach that was investigated in this thesis can be applied to other studies of genome evolution and genome biology, not only in vertebrates but in a wide range of other species.

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Dissertation
The role of peroxisomes in hepatocytes and pancreatic Beta-cells in mouse - Relationship of peroxisomes with mitochondria
Authors: --- --- --- ---
Year: 2016 Publisher: Leuven KU Leuven. Faculty of Pharmaceutical Sciences

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Peroxisomes are plastic organelles, present in almost all eukaryotic cells, which play an essential role in intermediary lipid metabolism. Inherited diseases with defects in peroxisomal function give rise to multiple organ defects which have been mimicked in mouse models for these diseases. However, their particular function in different cell types and tissues remains largely obscure. In this thesis we investigated the consequences of peroxisome inactivity in hepatocytes and in pancreatic β-cells. Whereas, historically, liver was the tissue in which peroxisomal function was first and most extensively studied, only scarce information is hitherto available on peroxisomes in β-cells of the pancreas.In early reports on Zellweger syndrome patients, lacking functional peroxisomes, hepatic mitochondrial abnormalities were documented which were later recapitulated in mouse models in which the peroxisome biogenesis factor PEX5 was deleted from hepatocytes. In the latter, the mitochondrial ultrastructural changes were accompanied by a reduced mitochondrial membrane potential and reduced activities of the respiratory complexes I, III and V. Our aim was to search for the mechanisms linking peroxisome dysfunction to mitochondrial disruption. We showed that the mitochondrial anomalies are associated with increased reactive oxygen species. Furthermore, as the ultrastructure of mitochondria and activity of complex I are unchanged in brain, muscle and heart lacking functional peroxisomes these mitochondrial abnormalities appeared to be hepatocyte selective. We further investigated whether peroxisomal metabolites that are specifically enriched in hepatocytes could be a causative factor by either manipulating their levels or comparing their levels in different mouse models of peroxisomal β-oxidation deficiency and correlating them with complex I activity. The severe reduction in the levels of docosahexaenoic acid (DHA) in phospholipids of mitochondria from Pex5-/- hepatocytes could be restored by administering DHA orally to L-Pex5-/- mice. However, no improvements were seen in the complex I activity after the treatment. Furthermore, wild type mice treated with phytol diet accumulated significant amounts of branched chain fatty acids (BCFAs) – phytanic and pristanic acid but did not show any impairment in complex I activity in liver. Moreover, dicarboxylic acids (DCAs) were not found to accumulate in the livers of L-Pex5-/- mice. Also complex I activity in the livers of Mfp1-/- mice fed coconut diet which were previously shown to accumulate DCAs was not decreased. Lastly, we measured the levels of the presumed mito-toxic bile acid intermediates, DHCA and THCA in the livers of adult and prenatal mice lacking either PEX5 or the peroxisomal β-oxidation enzyme MFP2. However, the levels did not correlate with the observed mitochondrial dysfunction. In summary, although we could not find the exact link between absence of peroxisomes and mitochondrial problems, we could exclude the role of depletion of DHA and accumulation of BCFAs, DCAs or bile acid intermediates in mediating the mitochondrial abnormalities.Previous literature supported contrasting ideas about peroxisomal metabolism being either harmful or beneficial for the functioning of β-cells. Therefore, the second aim of this thesis was to investigate the role of peroxisomes in pancreatic β-cells by generating and phenotyping β-cell specific Pex5 knockout mice (Rip-Pex5-/-). We found that glucose homeostasis in these mutant mice is disturbed which was characterized by increased fed as well as fasted blood glucose levels and glucose intolerance. The circulating insulin levels were reduced after a bolus of glucose in Rip-Pex5-/- mice which can be attributed to reduction in total pancreatic insulin content as well as β-cell mass. No changes were found in the glucose stimulated insulin secretion ex vivo, insulin content per islet and cytoplasmic as well as mitochondrial ROS production in cultured islet cells. However, the mitochondrial membrane potential was increased in cultured islet cells of mutant mice. Taken together, these results suggest that peroxisomes contribute to the normal functioning of healthy β-cells, however at this moment we were unable to unravel the mechanisms behind this relationship.Overall, this work pointed towards an essential role of peroxisomes in the normal functioning of hepatocytes and pancreatic β-cells, two cell types of utmost importance in metabolic processes.

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