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Book
Molecular Marker Technology for Crop Improvement
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Year: 2021 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

Since the 1980s, agriculture and plant breeding have changed with the development of molecular marker technology. In recent decades, different types of molecular markers have been used for different purposes: mapping, marker-assisted selection, characterization of genetic resources, etc. These have produced effective genotyping, but the results have been costly and time-consuming due to the small number of markers that could be tested simultaneously. Recent advances in molecular marker technologies such as the development of high-throughput genotyping platforms, genotyping by sequencing, and the release of the genome sequences of major crop plants have opened new possibilities for advancing crop improvement. This Special Issue collects 16 research studies, including the application of molecular markers in 11 crop species, from the generation of linkage maps and diversity studies to the application of marker-assisted selection and genomic prediction.

Keywords

Research & information: general --- Biology, life sciences --- durum wheat --- landraces --- marker-trait association --- root system architecture --- sugarcane --- parental line --- population structure --- plant breeding --- genetic diversity --- simple sequence repeats (SSR) --- Persea americana --- SMRT sequencing --- simple sequence repeat --- genetic relationship --- flavonoid biosynthesis --- fruit coloration --- marker-assisted selection --- microsatellites --- Rubus --- gene prioritization --- linkage disequilibrium --- tropical maize --- brown rice recovery --- milled rice recovery --- head rice recovery --- milling yield traits --- QTL mapping --- rice (Oryza sativa L.) --- tetraploid potato --- SNP markers --- SLAF-seq technology --- high-density genetic linkage map --- genome wide association study --- GWAS water use --- agronomic traits --- MTAs --- candidate genes --- TKW --- sedimentation volume --- SDS --- YR --- drought stress --- association mapping --- QTL hotspot --- seminal root --- gene pyramiding --- aroma --- QTL --- chromosome --- selection --- introgression line --- maize (Zea mays L.) --- Striga resistance/tolerance --- F2:3 biparental mapping --- Marker-assisted selection --- persimmon --- sex determination --- fruit astringency --- molecular markers --- genomics --- genomic selection --- genomic prediction --- whole genome regression --- grain quality --- near infra-red spectroscopy --- cereal crop --- sorghum --- multi-trait --- Triticum aestivum --- mapping population --- leaf rust --- stem rust --- pathogen races --- disease resistance --- apricot --- MAS --- breeding --- MATH --- PPV resistance --- agarose --- ParPMC --- ParPMC2-del --- high resolution melting --- ISBP markers --- drought --- MQTL --- wheat variability --- crop breeding --- genetic maps --- GWAS --- marker assisted selection --- DNA sequencing --- durum wheat --- landraces --- marker-trait association --- root system architecture --- sugarcane --- parental line --- population structure --- plant breeding --- genetic diversity --- simple sequence repeats (SSR) --- Persea americana --- SMRT sequencing --- simple sequence repeat --- genetic relationship --- flavonoid biosynthesis --- fruit coloration --- marker-assisted selection --- microsatellites --- Rubus --- gene prioritization --- linkage disequilibrium --- tropical maize --- brown rice recovery --- milled rice recovery --- head rice recovery --- milling yield traits --- QTL mapping --- rice (Oryza sativa L.) --- tetraploid potato --- SNP markers --- SLAF-seq technology --- high-density genetic linkage map --- genome wide association study --- GWAS water use --- agronomic traits --- MTAs --- candidate genes --- TKW --- sedimentation volume --- SDS --- YR --- drought stress --- association mapping --- QTL hotspot --- seminal root --- gene pyramiding --- aroma --- QTL --- chromosome --- selection --- introgression line --- maize (Zea mays L.) --- Striga resistance/tolerance --- F2:3 biparental mapping --- Marker-assisted selection --- persimmon --- sex determination --- fruit astringency --- molecular markers --- genomics --- genomic selection --- genomic prediction --- whole genome regression --- grain quality --- near infra-red spectroscopy --- cereal crop --- sorghum --- multi-trait --- Triticum aestivum --- mapping population --- leaf rust --- stem rust --- pathogen races --- disease resistance --- apricot --- MAS --- breeding --- MATH --- PPV resistance --- agarose --- ParPMC --- ParPMC2-del --- high resolution melting --- ISBP markers --- drought --- MQTL --- wheat variability --- crop breeding --- genetic maps --- GWAS --- marker assisted selection --- DNA sequencing


Book
Genetic and Morphological Variation in Tropical and Temperate Plant Species
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

Plants provide the foundation for the structure and function, as well as interactions, among organisms in both tropical and temperate zone habitats. To date, many investigations have revealed patterns and mechanisms generating plant diversity at various scales and from diverse ecological perspectives. However, in the era of climate change, anthropogenic disturbance, and rapid urbanization, new insights are needed to understand how plant species in these forest habitats are changing and adapting. Investigations of plants in both little-disturbed, more natural environments, as well as in urban areas in which crucial green infrastructure is ever more important for sustaining complex human societies are needed. This Special Issue of Forests will focus on plant variation from the perspectives of morphology, genetics, and function, especially plant interactions with biotic and abiotic factors. Research articles may address any aspect of plant evolution and community phylogenetics (explorations of patterns and mechanisms from diverse organismal levels, e.g., molecular, population, species, community, landscape, and ecosystem), plant functional traits (e.g., nutrient traits of leaf, stem, root; reproductive traits of flower, fruit, seed), and/or responses of plant species to changing environments (e.g., water, atmosphere, soil, human activities). Studies providing quantitative evaluation or description of interactions of plants with animals and microbes, both in natural and urban environments, including terrestrial and aquatic systems, are also welcome.

Keywords

Research & information: general --- Biology, life sciences --- Forestry & related industries --- Hevea brasiliensis Müll. Arg. --- HbMad-box genes --- conserved domains --- gene structures --- expression profiles --- stress treatments --- microsatellite locus --- Hardy-Weinberg equilibrium --- genetic differentiation --- breeding population --- artificial selection --- Aegle marmelos (L.) Corr. --- transcripts --- transcriptome assembly --- simple sequence repeats --- transcription factors --- cytochrome p450 --- glycotransferases --- metabolic pathway --- grafting --- pecan --- miRNA --- graft union --- sequencing --- edible forest product --- forest biology --- macro-fungi --- non-timber forest products (NTFPs) --- Pan-Pearl River Delta --- allometry --- anatomy --- Polygonatum odoratum --- Polygonatum multiflorum --- shape --- shoot --- endophytes --- medicinal plants --- pathogen --- molecular identification --- plant-microbe interaction --- gas exchange --- chlorophyll fluorescence --- growth trait --- genetic variation --- early selection --- pedunculate oak --- drought --- stress --- memory --- flushing --- autumn leaf senescence --- phenological shift --- carry-over effect --- mangroves --- DNA barcoding --- species identification --- phylogenetic relation --- moso bamboo --- heat shock factor gene --- abiotic stresses --- co-expression --- yellow-green leaf mutant --- transcriptome --- antenna protein --- photosynthesis --- birch --- Dalbergia odorifera T. Chen --- genetic diversity --- population structure --- EST-SSR marker --- microsatellite marker --- rosewood --- conservation --- Pinus massoniana --- introgression hybrid --- RNA sequencing --- DEGs --- reproduction --- phenology --- leafing out --- flowering --- senescence --- cumulative logistic regression --- hawthorn --- provenance trial --- non-local populations --- variance analysis --- lime application --- understory removal --- microbial community --- forest management --- Eucalyptus --- protogyny (PG) --- protandry (PA) --- pollen viability --- seed success --- polyploidy --- phosphate solubilizing bacteria --- nutrition --- oil tea --- Lagerstroemia species --- simple sequence repeat markers --- bulked segregant analysis --- creeping trait --- plant architecture --- climate change --- forest biodiversity --- plant–environment interactions --- plant traits --- urbanization --- Hevea brasiliensis Müll. Arg. --- HbMad-box genes --- conserved domains --- gene structures --- expression profiles --- stress treatments --- microsatellite locus --- Hardy-Weinberg equilibrium --- genetic differentiation --- breeding population --- artificial selection --- Aegle marmelos (L.) Corr. --- transcripts --- transcriptome assembly --- simple sequence repeats --- transcription factors --- cytochrome p450 --- glycotransferases --- metabolic pathway --- grafting --- pecan --- miRNA --- graft union --- sequencing --- edible forest product --- forest biology --- macro-fungi --- non-timber forest products (NTFPs) --- Pan-Pearl River Delta --- allometry --- anatomy --- Polygonatum odoratum --- Polygonatum multiflorum --- shape --- shoot --- endophytes --- medicinal plants --- pathogen --- molecular identification --- plant-microbe interaction --- gas exchange --- chlorophyll fluorescence --- growth trait --- genetic variation --- early selection --- pedunculate oak --- drought --- stress --- memory --- flushing --- autumn leaf senescence --- phenological shift --- carry-over effect --- mangroves --- DNA barcoding --- species identification --- phylogenetic relation --- moso bamboo --- heat shock factor gene --- abiotic stresses --- co-expression --- yellow-green leaf mutant --- transcriptome --- antenna protein --- photosynthesis --- birch --- Dalbergia odorifera T. Chen --- genetic diversity --- population structure --- EST-SSR marker --- microsatellite marker --- rosewood --- conservation --- Pinus massoniana --- introgression hybrid --- RNA sequencing --- DEGs --- reproduction --- phenology --- leafing out --- flowering --- senescence --- cumulative logistic regression --- hawthorn --- provenance trial --- non-local populations --- variance analysis --- lime application --- understory removal --- microbial community --- forest management --- Eucalyptus --- protogyny (PG) --- protandry (PA) --- pollen viability --- seed success --- polyploidy --- phosphate solubilizing bacteria --- nutrition --- oil tea --- Lagerstroemia species --- simple sequence repeat markers --- bulked segregant analysis --- creeping trait --- plant architecture --- climate change --- forest biodiversity --- plant–environment interactions --- plant traits --- urbanization


Book
Molecular Marker Technology for Crop Improvement
Author:
Year: 2021 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

Loading...
Export citation

Choose an application

Bookmark

Abstract

Since the 1980s, agriculture and plant breeding have changed with the development of molecular marker technology. In recent decades, different types of molecular markers have been used for different purposes: mapping, marker-assisted selection, characterization of genetic resources, etc. These have produced effective genotyping, but the results have been costly and time-consuming due to the small number of markers that could be tested simultaneously. Recent advances in molecular marker technologies such as the development of high-throughput genotyping platforms, genotyping by sequencing, and the release of the genome sequences of major crop plants have opened new possibilities for advancing crop improvement. This Special Issue collects 16 research studies, including the application of molecular markers in 11 crop species, from the generation of linkage maps and diversity studies to the application of marker-assisted selection and genomic prediction.

Keywords

durum wheat --- landraces --- marker-trait association --- root system architecture --- sugarcane --- parental line --- population structure --- plant breeding --- genetic diversity --- simple sequence repeats (SSR) --- Persea americana --- SMRT sequencing --- simple sequence repeat --- genetic relationship --- flavonoid biosynthesis --- fruit coloration --- marker-assisted selection --- microsatellites --- Rubus --- gene prioritization --- linkage disequilibrium --- tropical maize --- brown rice recovery --- milled rice recovery --- head rice recovery --- milling yield traits --- QTL mapping --- rice (Oryza sativa L.) --- tetraploid potato --- SNP markers --- SLAF-seq technology --- high-density genetic linkage map --- genome wide association study --- GWAS water use --- agronomic traits --- MTAs --- candidate genes --- TKW --- sedimentation volume --- SDS --- YR --- drought stress --- association mapping --- QTL hotspot --- seminal root --- gene pyramiding --- aroma --- QTL --- chromosome --- selection --- introgression line --- maize (Zea mays L.) --- Striga resistance/tolerance --- F2:3 biparental mapping --- Marker-assisted selection --- persimmon --- sex determination --- fruit astringency --- molecular markers --- genomics --- genomic selection --- genomic prediction --- whole genome regression --- grain quality --- near infra-red spectroscopy --- cereal crop --- sorghum --- multi-trait --- Triticum aestivum --- mapping population --- leaf rust --- stem rust --- pathogen races --- disease resistance --- apricot --- MAS --- breeding --- MATH --- PPV resistance --- agarose --- ParPMC --- ParPMC2-del --- high resolution melting --- ISBP markers --- drought --- MQTL --- wheat variability --- crop breeding --- genetic maps --- GWAS --- marker assisted selection --- DNA sequencing


Book
Genetic and Morphological Variation in Tropical and Temperate Plant Species
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

Loading...
Export citation

Choose an application

Bookmark

Abstract

Plants provide the foundation for the structure and function, as well as interactions, among organisms in both tropical and temperate zone habitats. To date, many investigations have revealed patterns and mechanisms generating plant diversity at various scales and from diverse ecological perspectives. However, in the era of climate change, anthropogenic disturbance, and rapid urbanization, new insights are needed to understand how plant species in these forest habitats are changing and adapting. Investigations of plants in both little-disturbed, more natural environments, as well as in urban areas in which crucial green infrastructure is ever more important for sustaining complex human societies are needed. This Special Issue of Forests will focus on plant variation from the perspectives of morphology, genetics, and function, especially plant interactions with biotic and abiotic factors. Research articles may address any aspect of plant evolution and community phylogenetics (explorations of patterns and mechanisms from diverse organismal levels, e.g., molecular, population, species, community, landscape, and ecosystem), plant functional traits (e.g., nutrient traits of leaf, stem, root; reproductive traits of flower, fruit, seed), and/or responses of plant species to changing environments (e.g., water, atmosphere, soil, human activities). Studies providing quantitative evaluation or description of interactions of plants with animals and microbes, both in natural and urban environments, including terrestrial and aquatic systems, are also welcome.

Keywords

Hevea brasiliensis Müll. Arg. --- HbMad-box genes --- conserved domains --- gene structures --- expression profiles --- stress treatments --- microsatellite locus --- Hardy-Weinberg equilibrium --- genetic differentiation --- breeding population --- artificial selection --- Aegle marmelos (L.) Corr. --- transcripts --- transcriptome assembly --- simple sequence repeats --- transcription factors --- cytochrome p450 --- glycotransferases --- metabolic pathway --- grafting --- pecan --- miRNA --- graft union --- sequencing --- edible forest product --- forest biology --- macro-fungi --- non-timber forest products (NTFPs) --- Pan-Pearl River Delta --- allometry --- anatomy --- Polygonatum odoratum --- Polygonatum multiflorum --- shape --- shoot --- endophytes --- medicinal plants --- pathogen --- molecular identification --- plant-microbe interaction --- gas exchange --- chlorophyll fluorescence --- growth trait --- genetic variation --- early selection --- pedunculate oak --- drought --- stress --- memory --- flushing --- autumn leaf senescence --- phenological shift --- carry-over effect --- mangroves --- DNA barcoding --- species identification --- phylogenetic relation --- moso bamboo --- heat shock factor gene --- abiotic stresses --- co-expression --- yellow-green leaf mutant --- transcriptome --- antenna protein --- photosynthesis --- birch --- Dalbergia odorifera T. Chen --- genetic diversity --- population structure --- EST-SSR marker --- microsatellite marker --- rosewood --- conservation --- Pinus massoniana --- introgression hybrid --- RNA sequencing --- DEGs --- reproduction --- phenology --- leafing out --- flowering --- senescence --- cumulative logistic regression --- hawthorn --- provenance trial --- non-local populations --- variance analysis --- lime application --- understory removal --- microbial community --- forest management --- Eucalyptus --- protogyny (PG) --- protandry (PA) --- pollen viability --- seed success --- polyploidy --- phosphate solubilizing bacteria --- nutrition --- oil tea --- Lagerstroemia species --- simple sequence repeat markers --- bulked segregant analysis --- creeping trait --- plant architecture --- climate change --- forest biodiversity --- plant–environment interactions --- plant traits --- urbanization

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