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Bacterial infections cause millions of deaths globally, particularly in children and the elderly, and four of the 10 leading causes of death are infectious diseases in low- and middle-income countries. The continuous use of antibiotics has resulted in multi-resistant bacterial strains all over the world, such as Community-associated Methicillin-resistant Staphylococcus aureus (MRSA), extended-spectrum β-lactamases (ESBLs), and, as expected, hospitals have become breeding grounds for human-associated microorganisms, especially in critical care units.
actinomycetes --- antibiotic biosynthesis --- silent biosynthetic pathways --- γ-butyrolactones --- HiTES --- translation inhibitors --- marine actinobacteria --- Streptomyces sp. --- enzyme inhibition --- antimicrobial --- antioxidant --- cytotoxicity --- GC-MS --- pyrrolopyrazines --- myxobacteria --- antivirals --- secondary metabolites --- HIV --- Ebola --- hepatitis viruses --- diversity --- uncultured --- new antibiotics --- Streptomyces --- polyketides --- secondary metabolite --- polyketide synthases (PKSs)
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Phenolic compounds are an extremely diverse class of ubiquitous secondary metabolites produced by a variety of organisms playing different biological roles. They have numerous types of demonstrated bioactivities, including antioxidant, antimicrobial, anti-inflammatory, antitumoral, immunomodulator, neuroprotective, cardioprotective, and antidiabetic activities. Marine organisms produce a vast collection of unique phenolic structures, some of them not found in terrestrial habitats. Progress in different aspects is rapidly advancing, and this Special Issue will provide updated information and recent studies on marine phenolics. Specially, this issue is focused on their chemical characterization, elucidation of their structures, evaluation of their biological properties and mechanisms of action, efficient extraction and purification technologies, development of value-added applications, as well as formulation of novel products.
ultrasound assisted extraction --- conventional extraction --- polyphenols --- phlorotannin --- macroalgae --- antioxidant capacity --- seaweeds --- antioxidant potential --- LC-ESI-QTOF-MS/MS --- HPLC-PDA --- seaweed polyphenols --- hypoglycemic effect --- starch digestion --- enzyme inhibition --- cochayuyo --- seaweed polyphenolics --- polyphenolics extractions --- phlorotannins --- bromophenols --- flavonoids --- phenolic terpenoids --- polyphenolics bioactivities --- marine phenolics --- emerging technologies --- extraction --- Ascophyllum --- seaweed --- health benefits --- isomers --- LC-MSn --- diversity --- phenolics --- simple phenolics --- seawater --- algae --- seagrass --- biological activity --- brown seaweeds --- microwave-assisted extraction --- response surface methodology --- antioxidant --- antiradical activity --- xanthine oxidase --- α-glucosidase
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Marine habitats are promising sources to identify novel organisms and compounds. A total of 70% of the planet’s surface is covered by ocean, and little is known about the biosphere within these habitats. In the last few years, numerous novel bioactive compounds or secondary metabolites from marine environments have been described. This is, and will be, a promising source of candidate compounds in pharma research and chemical biology. In recent years, a number of novel techniques have been introduced to the field and it has become easier to actually (bio-)prospect compounds such as enzyme inhibitors. Those novel compounds then need to be characterized and evaluated in comparison to well-known representatives. This Special Issue focuses on the description of novel enzyme inhibitors of marine origin, including bioprospecting, omic approaches, and structural and mechanistic aspects.
sponge Monanchora pulchra --- pentacyclic guanidine alkaloids --- GH36 α-galactosidase --- GH109 α-N-acetylgalactosaminidase --- slow-binding irreversible inhibitor --- monanchomycalin B --- monanhocidin A --- normonanhocidin A --- Alzheimer′s disease --- BACE1 --- acetylcholinesterase --- in silico docking --- phlorotannins --- Ulva intestinalis --- ACE inhibitory peptide --- optimization --- purification --- structural identification --- molecular docking --- secondary metabolites --- Mycosphaerella sp. --- asperchalasine --- α-glucosidase --- kinase inhibitors --- drug development --- marine natural products --- inhibitor --- macroalgae --- marine fish --- protease --- Ulva ohnoi --- functional annotation --- structure–function relation --- natural products --- bioactives --- enzyme inhibition --- inactivation --- marine bacteria --- marine fungi --- marine sponges
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Biosensors are analytical devices used for the detection of a chemical substance, or analyte, which combines a biological component with a physicochemical detector. Detection and quantification are based on the measurement of the biological interactions. The biological element of a biosensor may consist of tissues, microorganisms, organelles, cell receptors, enzymes, antibodies and nucleic acids. These devices have been shown to have a wide range of applications in a vast array of fields of research, including environmental monitoring, food analysis, drug detection and health and clinical assessment, and even security and safety. The current Special Issue, “Biosensors: 10th Anniversary Feature Papers”, addresses the existing knowledge gaps and aids the advancement of biosensing applications, in the form of six peer-reviewed research and review papers, detailing the most recent and innovative developments of biosensors.
antioxidants --- biosensor --- nanomaterials --- vasodilator activity --- breast cancer screening --- imaging biomarker --- deep sparse autoencoder --- dimensionality reduction --- deep-learning features --- Bioassays --- high performance thin layer chromatography --- endocrine disrupting compounds --- fluorescent proteins --- wastewater --- electromagnetic piezoelectric acoustic sensor --- quartz --- adsorption --- diagnostics --- extracellular vesicle --- dithiocarbamate fungicides --- chromatography --- Raman spectroscopy --- sensors --- enzyme inhibition --- voltammetry --- biosensors --- tobacco mosaic virus (TMV) --- capacitive field-effect sensor --- bi-enzyme biosensor --- enzyme-logic gate --- urease --- penicillinase
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Enzyme-mediated catalysis offers special advantages over chemical methods. First of all, enzymes are considered an environmentally friendly tool as they help to avoid the requirements of toxic chemicals and high energy. In addition, more feasible processes can be accomplished through enzymatic reactions owing to the enzyme’s innate properties related to high substrate specificity and selectivity. For this reason, biotechnological production of a wide range of products, such as alternative fuels and value-added biochemicals, has been commercially applicable with the aid of enzymes, either in isolated form or in the whole-cell system. In particular, enzymatic transformation of low-value but cheap/abundant starting materials (i.g. biomass) into high-value materials can facilitate the circular and sustainable bioeconomy. This Special Issue on “Enzyme Catalysis: Advances, Techniques, and Outlooks” consists of six articles, which address diverse industrially relevant enzymes with applications in foods, detergent, cosmetics, medicine, etc. A robust methodology related to enzyme kinetics is also addressed.
CYP102A1 --- atorvastatin --- 4-hydroxy atorvastatin --- hydrogen peroxide --- P450 peroxygenase --- NADPH --- enzyme inhibition --- integrated Michaelis–Menten equations --- reaction product inhibition --- two mutually exclusive inhibitors --- protease --- detergent --- surfactant --- cleaning --- glucose isomerase --- xylose isomerase --- high-fructose corn syrup --- HFCS --- bioethanol --- structure --- l-fucose isomerase --- l-fucose --- l-fuculose --- extremophile --- halothermophilic bacteria --- Halothermothrix orenii --- lysozyme --- muramidase --- N-acetylmuramide glycanhydrolase --- human --- N-acetyl-β-d-glucosaminidase --- NAG --- crystal structure --- n/a --- integrated Michaelis-Menten equations
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The G.B. Elyakov Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences (PIBOC FEB RAS) was founded in 1964 in Vladivostok in the Far East of Russia. Over many years, we have been carrying out studies on the natural products of both marine and terrestrial origin. In collaboration with many Russian and foreign scientists, we have investigated many hundreds of diverse biomolecules, including steroids and terpenoids, quinoid compounds and alkaloids, polysaccharides and lipids, enzymes and lectins, proteins, and peptides. The Institute has a collection of marine microorganisms (KMM) PIBOC, which includes more than 4000 strains of marine bacteria and more than 1000 strains of marine fungi. The biological activity of natural compounds is also being studied. This book includes the 14 manuscripts which covered almost all aspects of PIBOC research activity in the fields of bioorganic chemistry, biochemistry, organic synthesis of natural compounds, marine microbiology, and genetic engineering, and we hope it will provide interesting new information for scientists working in these fields.
polyhydroxylated steroids --- NMR spectra --- starfish --- Anthenoides laevigatus --- cytotoxicity --- soft agar assay --- kainic acid --- domoic acid --- dysiherbaine --- neodysiherbaine A --- marine bacteria --- whole genome sequence --- porin --- amino acids composition --- bilayer lipid membrane --- pore-forming activity --- spatial structure --- phlorotannins --- phlorethols --- anticancer activity --- colorectal cancer --- radiosensitizer --- radiotherapy --- 1,4-naphthoquinones --- quinoid compounds --- thioglycosides --- quinone-sugar conjugates --- cytotoxic activity --- antibiotic activity --- histochrome --- echinochrome A --- oxidative degradation --- HPLC–DAD–MS --- NMR --- actinoporin --- sea anemone --- Heteractis crispa --- anti-migratory activity --- glycosphingolipids --- cerebrosides --- peroxidation products --- structure elucidation --- allylic thioether --- ESI-MS --- GC-MS --- mass spectra --- glass sponge --- isomalabaricanes --- Stelletta sp. --- marine sponge --- terpenoid --- Cobetia amphilecti --- Cobetia litoralis --- Cobetia pacifica --- Cobetia marina --- Cobetia crustatorum --- identification markers --- alkaline phosphatase PhoA --- lanosterol 14-alpha demethylase --- flavonoids --- enzyme inhibition --- surface plasmon resonance --- spectral titration --- molecular docking --- Zobellia --- genomes --- polysaccharide lyase family 7 --- alginate utilization system --- paralogs --- orthologs --- recombinant phospholipase A1 --- Yersinia pseudotuberculosis --- inclusion bodies --- fusion protein --- green fluorescent protein --- porin gene expression --- antibiotic stress --- phenotypic heterogeneity --- n/a --- HPLC-DAD-MS
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Essential oils extracted by the distillation or hydrodistillation of aromatic plants are a complex mixture of volatile compounds with several biological activities. Their efficacy as antimicrobial agents is related to the activity of several natural compounds belonging to different chemical families that can act both in synergy with each other and with other antibiotics. The antibiotic resistance detected among pathogens has been quickly increasing in recent years, and the control of some of these microorganisms is becoming a planetary emergency for human and animal health. The control of the microbial growth is a problem of great importance also for the food industry (food deterioration and shelf life extension) and for the world of cultural heritage (indoor and outdoor phenomena of biodeterioration). Essential oils can play an important role in this scenario, due their recognized broad-spectrum antimicrobial activity. Therefore, the main subject of this Special Issue includes an essential oil-based approach to control microrganisms in areas such as human and veterinary medicine, entomology, food industry and agriculture. In addition, the chemical composition of essential oils from endemic and rare medicinal/aromatic plants, nanoformulations of essential oils, applications in human and veterinary medicine and its use as animal feeding supplements are topics covered in this Special Issue
extracellular polymeric substance matrix --- cellulose synthesis --- enzyme inhibition --- essential oils --- Boswellia sacra --- frankincense essential oil --- GC/MS analysis --- antimicrobial activity --- Staphylococcus aureus --- Pseudomonas aeruginosa --- Propionibacterium acnes --- Candida albicans --- Malassezia furfur --- lamb --- carvacrol --- monensin --- meat tenderness --- TBARS --- essential oil --- genetic --- RAPD --- thyme --- Thymus quinquecostatus --- Thymus vulgaris --- Penicillium rubens --- growth inhibition --- RNA microarray --- gene expression --- metabolic pathway analysis --- Ferula --- GC --- chemometrics --- antioxidant activity --- Acinetobacter baumannii --- MDR --- biofilm --- antimicrobial --- Pimenta --- Myrtaceae --- wound infection --- eugenol --- 1,8-cineole --- GC/MS --- Salmonella --- Origanum vulgare --- ciprofloxacin --- poultry farms --- pig farms --- Staphylococcus spp. --- human semen --- antimicrobial resistance --- rosewood --- linalool --- marine bacteria --- ABTS --- Trypanosoma cruzi --- cytotoxicity --- nitrite --- nitric oxide --- antifungal activity --- nanoencapsulation --- poly(ε-caprolactone) --- Thymus capitatus --- Satureja montana --- Lavandula angustifolia --- Lavandula intermedia --- Origanum hirtum --- Monarda didyma --- Monarda fistulosa --- Alternaria alternata --- cucurbits --- Cymbopogon citratus --- GC-MS --- Stagonosporopsis cucurbitacearum --- n/a
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Milk processing is one of the most ancient food technologies, dating back to around 6000 B.C. A huge number of milk products have been developed worldwide, representing a spectacular example of biodiversity and a priceless cultural heritage. After millennia of unanimous appreciation as a pillar of human nutrition, a series of questions about the desirability of their wide consumption have been raised. In the light of the growing threat deriving mostly from the spread of veganism and health consciousness, improving milk prcoessing safety and dairy nutritional characteristics, as well as deepening their functional characteristics, are of a primary exigency. This Special Issue contains several articles focusing on this hot topic, all of which add knowledge to the field and supply interesting ideas for developing new products and processes.
milk composition --- Parmigiano Reggiano cheese --- cheese-making efficiency --- curd fines --- cheese-making losses --- zinc --- ewes’ milk cheese --- rumenic acid --- zinc-dependent enzyme --- volatile compound --- cheesemaking --- donkey milk --- fatty acids --- sensory analysis --- VOC --- starch --- yogurt --- rheology --- sensory --- texture --- defatted cheese --- peptides --- amino acids --- bioactivity --- digestibility --- cheese quality --- mountain cheese --- fatty acid profile --- volatile organic compounds --- sensory properties --- milk clotting --- cheese --- kiwifruit --- actinidin --- nutraceutical properties --- microstructure --- Raman spectroscopy --- confocal laser scanning microscopy --- cheese freezing --- cream cheese --- NMR spectroscopy --- cryoprotectants --- black tea --- acidified dairy gel --- textural property --- antioxidant capacity --- functional yogurt --- fenugreek and Moringa oleifera seed flours --- total phenolic content --- antioxidant activity --- antibacterial activity --- mineral content --- Rubus suavissimus S. Lee (Chinese sweet tea) --- antioxidant --- anticancer --- antihypertensive --- polymerized goat milk whey protein --- soy isoflavones --- nanoparticle --- physicochemical property --- milk fat globules --- bovine milk proteins --- milk fat globule membrane --- comparative proteomics --- infant formula preparation --- n/a --- panela cheese --- angiotensin-converting enzyme inhibition --- probiotic addition --- DPPH --- ABTS --- ewes' milk cheese
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Issues relating to the gender schism and its effect on the career advancement of women in the Academy, especially in the field of STEM disciplines, deserve our attention and the efforts of all the scientific community to mitigate the gender gap. In order to embrace gender equality, recognize the career progression of women, and to celebrate the achievements of women in the field of bioorganic chemistry, we present contributions both from highly renowned female scientists and young female researchers who are in the early stages of their careers. This Special Issue includes fifteen manuscripts, including eleven high-quality research articles and four comprehensive review articles in the area of bioorganic chemistry, published from mid-2020 to early 2022. The scope of this Special Issue covers a wide range of topics at the organic chemistry–biology interface, including the synthesis and derivatization of natural compounds and their analogues, and the investigation of their biological activities in the human health field (for instance as antitumorals, antioxidants and antimicrobial agents), as well as their possible application in the crop protection field as agrochemicals. An example of nanoparticle-based biomaterial is also included. The techniques employed, besides organic synthesis, are in silico studies (docking procedures and molecular modeling), FT-IR spectroscopy, laser diffraction, PET, fluorescence, STD-NMR studies, enzymatic evaluation, experiments on cell lines and in vivo studies on mice.
Technology: general issues --- Chemical engineering --- antibiotics --- biochemical studies --- iminosugars --- inhibitors --- insect trehalase --- trehalose --- in vivo studies --- mammalian trehalase --- natural compounds --- selectivity --- interrupted Nazarov cyclization --- pentacyclic steroids --- antiproliferative activity --- d-annulated steroids --- Lewis acid --- dental caries --- enamel remineralisation --- hydroxyapatite --- amelogenin --- amelogenin-derived peptides --- leucine-rich amelogenin peptides --- tyrosine-rich amelogenin peptides --- cannabidiol --- molecular mechanisms --- neurological diseases --- neuroprotective effects --- strigolactones --- Strigol --- anti-cancer --- antimicrobials --- sustainable agriculture --- α,α-difluorophosphonate --- deoxyxylulose phosphate reductoisomerase --- 1-deoxy-dxylulose 5-phosphate reductoisomerase (DXR) --- antimicrobial --- fosmidomycin --- isoprenoid biosynthesis --- 2-C-methyl-derythritol 4-phosphate (MEP) pathway --- multivalency --- gold nanoparticles --- enzyme inhibition --- Jack bean α-mannosidase --- aminoproline scaffold --- integrin targeting --- ligand design --- peptidomimetic synthesis --- leukocyte integrins --- BODIPY --- β-galactosidase activity --- PET --- fluorescent --- dispirooxindoles --- anticancer activity --- cytotoxicity --- 3D molecular docking --- p53/MDM2 interaction --- terpenes --- hydrazones --- penetration enhancers --- liposomes --- lipids --- stratum corneum --- laser diffraction --- fluorescence probe --- pyrene --- FT-IR spectroscopy --- heterohelicene --- chirality --- resolution --- enantiomers --- chiroptical --- screw-shaped compounds --- betulinic acid --- α-glucosidase --- inhibition mechanism --- postprandial hyperglycemia --- synergistic effect --- AMR --- persisters --- (p)ppGpp --- fragment screening --- thermal shift assay --- STD-NMR --- boron --- phthalimide --- benzamide --- glycosidase --- cancer --- boron neutron capture therapy --- n/a
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This theme issue is to celebrate Professor Robert Verpoorte’s 75th birthday. Prof. Verpoorte has been working in Leiden University over 40 years. There is no need to dwell upon the contributions of Dr. Verpoorte to plant-derived natural products research during his whole life. Dr. Verpoorte was a highly productive scientist throughout his academic career, with over 800 scientific publications in the form of research papers, books, and book chapters. His research interests are very diverse, cover- ing numerous topics related to plant-based natural products such as plant cell biotech- nology, biosynthesis, metabolomics, genetic engineering, and green technology, as well as the isolation of new biologically active compounds. He has left indelible footprints in all these fields, and he is widely recognised as a pioneer in the work of the biosynthesis of indole alkaloids, NMR-based metabolomics, and green technology in natural products production. As close friends and colleagues who have been in nearly daily contact with him over the last 20 years viewing all of these remarkable scientific contributions, we felt compelled to recognize this by the publication of a Special Issue of this journal dedicated to him.Thus, this Special Issue has now finally been released with the help of many of his colleagues and former students as a token of our gratitude to his impressive work.The Special Issue covers five main natural products topics: (1) chemical profiling and metabolomics, (2) separation/isolation and identification of plant specialized metabolites, (3) pharmacognosy of natural products to identify bioactive molecules from natural prod- ucts, (4) novel formulation of natural products, and (5) overview of natural products as a source of bioactive molecules.
natural extract --- glycerin --- chemical profiling --- centrifugal partition chromatography --- 13C nuclear magnetic resonance --- cosmetic industry --- Psychotria malayana Jack --- type 2 diabetes --- α-glucosidase inhibitors --- LC-MS --- metabolomics --- molecular docking --- colorectal cancer --- HCT 116 --- telomerase --- telomerase inhibitor --- berberine --- downregulation --- cell cycle arrest --- telomere erosion --- molecular imaging --- direct analysis in real-time mass spectrometry --- ephedra alkaloids --- ephedrine --- methylephedrine --- Ephedra sinica --- natural products --- dereplication --- databases --- spectroscopy --- taxonomy --- molecular structures --- lignans --- secoisolariciresinol --- RNA interference --- flax --- osmotic stress --- 1H-NMR --- ionic liquids --- oxypeucedanin hydrate --- byakangelicin --- A. dahurica --- back-extraction --- enrichment --- plum brandy --- GC-FID-MS --- enzyme inhibition assay --- antibacterial assay --- effect-directed analysis --- bioassay --- botanicals --- health food --- protein tyrosine phosphatases (PTPs) --- PTP-MEG2 --- phloridzin --- glucose-uptake --- Eleutherococcus senticosus --- fruits --- eleutherosides --- nutri-pharmacological --- herbs --- inflammation --- docking --- NuBBE database --- chalcones --- Nacobbus aberrans --- nematicidal activity --- α-terthienyl --- stigmasterol --- quercetagetin derivatives --- 9-O-angeloyl-retronecine N-oxide --- alkaloid --- Solanaceae --- tropane --- indole --- pyrrolidine --- Datura --- terpenoid --- signaling --- chemical cue --- kairomone --- potentiation --- cytotoxic activity --- NMR --- Ononis diffusa --- Ononis variegata --- oxylipins --- toronjil --- Mexican agastache --- aromatic plants --- weld --- Reseda luteola L. --- natural yellow dye --- μ-analysis --- micro-extraction of wool --- UHPLC --- fingerprinting --- flavones --- structure elucidation --- n/a
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